Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00007 ATGTGTATCTTCAAATCCTCTGCAACCCACTTGCTACTTCTTTCTCTGTTTTCGTTGCTAAGCTTTGCAAGTGAAGCAGCTCCAATATACAGCGCTCATGACTGCACAAATGGATCTTATTACCAACCCAACACAACTTTCCAAGCCAACTTAAAAGTCCTCCTCTCATCCCTTGTCTCCAACGCCACCCTCCACGACGGTTTCTACAGCACCAACATCTCCCTCGGAAACCCTGGCCAGGTCAAGGGACTCTTCCTCTGCCGCGGTGACGTCACCCCCACCGTCTGTCAACAGTGTGTCACCGCCGCAGCCATGAACATTACACGCTTCTGCACCAACCAAACAGAATCCATCATCTGGTACGACGTTTGTATGCTCCGTTACTCCGACAACTTCCCCTTAAACAACATAGTCCCAGGAATGAACTTAAAGGCCGATGATAGCGTCCCCAACTCAGACCTTACCCAGTTCAATGATTTACTGTCATCCACGTTGAATGATATAACACAGAAAGCTGTGAATTCTCCTTCGGATAAGAAGTTTGCTGCAAAAGAAGCAAATTTCACGAGCTCAATGAAGCTCTACACACTGGCACAGTGCACGCCCGATTTGTCCACTTTTGATTGTAACAGGTGTTTCTCAAGCGCCATTAGTGCTCTTCCAAATTGCTGTAGTGGGAAACGAGGTGCAAGAACCCTGCTTCCGAGTTGTAATATCAGATACGAATTGTACCCATTTTACAATGCCTCGGCGGTATCGACTCAACCAGAGCTTTCGTCTCCTTCATCAGGAAAAAGCAATATCTCTATAATTGTTGCGATTGTTGTCCCAATTGTTGTTGCCGTGGCACTTTTCATTCTCGGATGCTGCTTCCTGCGTAAGAGGGCAAGCAAGAAGTATAACAGTTTTAGACAGGACTCAAGTAATCTCTATGTCTTTCTTTATCATGTAGTTGGGGATGATCTTATAGATGTGGAGTCCTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCGCAAACAGCTTCGCGGATGAGAACAAGATCGGCCAAGGTGGATTTGGCGTGGTTTATAAGGGTATCCTCCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCCTTGCAGGGTACAGTAGAGTTTACGAATGAAGCTATCCTTGTGGCTAAGCTTCAACATAGAAATTTAGTGAGGCTGTTGGGATTTTGCTTGGAGGGGCAGGAGAAGATGCTTATCTATGAATACATACCAAACAAAAGCCTCGATCGCTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAATATCATTGTTGGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTAGAATTATACATCGTGATCTCAAAGCTAGCAATGTTCTACTGGATGAAAAGATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGCCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCAGAATATGCATTGCGTGGACAATTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGATTTTTATCAAACTGGACATGCTGATGACCTCTTAAGCTATGTTTGGAAAAATTGGACAGAGCAAACACCTTTGGAATTGCTGGATCCAACCCTGAGAGATTCTTATTCAAGAAACGAAGTCATCAGATGCATCCATATTGGTTTATTGTGCGTTCAGGAAAATCCATCTGACAGGCCTTCGATGGCAACTATTTCACTTATGTTGAACAGTTATACAGTTACCATGTCATTACCTCGAAAGCCAGCATCTTTCCTGCATGGAAGAACACCTAACAGGCTAAAAAATGGGCTTGATTCTGATCAGTCCACCAACTGTTCAATTCCATCAATTCCGTGGTCTAATAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 2013 0.4352 MCIFKSSATHLLLLSLFSLLSFASEAAPIYSAHDCTNGSYYQPNTTFQANLKVLLSSLVSNATLHDGFYSTNISLGNPGQVKGLFLCRGDVTPTVCQQCVTAAAMNITRFCTNQTESIIWYDVCMLRYSDNFPLNNIVPGMNLKADDSVPNSDLTQFNDLLSSTLNDITQKAVNSPSDKKFAAKEANFTSSMKLYTLAQCTPDLSTFDCNRCFSSAISALPNCCSGKRGARTLLPSCNIRYELYPFYNASAVSTQPELSSPSSGKSNISIIVAIVVPIVVAVALFILGCCFLRKRASKKYNSFRQDSSNLYVFLYHVVGDDLIDVESLQFDLATVEAAANSFADENKIGQGGFGVVYKGILPNGQEIAVKRLSVTSLQGTVEFTNEAILVAKLQHRNLVRLLGFCLEGQEKMLIYEYIPNKSLDRFLFDPVKQRELDWSRRYNIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDEKMNPKISDFGMAKIFQPDQTQVNTGRIVGTYGYMSPEYALRGQFSVKSDVFSFGVLVLEIVSGKKNTDFYQTGHADDLLSYVWKNWTEQTPLELLDPTLRDSYSRNEVIRCIHIGLLCVQENPSDRPSMATISLMLNSYTVTMSLPRKPASFLHGRTPNRLKNGLDSDQSTNCSIPSIPWSNNEVSITEVYPR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00007 670 ProSiteProfiles Protein kinase domain profile. 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00007 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Gabi3628g00007 670 CDD STKc_IRAK 348 614 - -
Gabi3628g00007 670 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 667 - -
Gabi3628g00007 670 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Gabi3628g00007 670 SMART serkin_6 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00007 670 FunFam cysteine-rich receptor-like protein kinase 10 418 620 - -
Gabi3628g00007 670 FunFam Cysteine-rich receptor-like protein kinase 10 141 246 - -
Gabi3628g00007 670 Gene3D Transferase(Phosphotransferase) domain 1 418 623 - -
Gabi3628g00007 670 Gene3D Phosphorylase Kinase; domain 1 315 417 - -
Gabi3628g00007 670 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Gabi3628g00007 670 Pfam Salt stress response/antifungal 152 244 IPR002902 -
Gabi3628g00007 670 Gene3D - 144 246 IPR038408 -
Gabi3628g00007 670 Gene3D - 29 132 IPR038408 -
Gabi3628g00007 670 SUPERFAMILY Protein kinase-like (PK-like) 328 637 IPR011009 -
Gabi3628g00007 670 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 132 - -
Gabi3628g00007 670 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gabi3628g00007 670 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 304 417 - -
Gabi3628g00007 670 Pfam Protein tyrosine and serine/threonine kinase 345 610 IPR001245 GO:0004672|GO:0006468
Gabi3628g00007 670 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00007 Gabi-Chr3628 18359 21372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00007 4 670 Receptor kinase-like Gene Family AT4G05200 47.668 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3628g00007 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00007 - - gmx:547727 1011.52