Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00006 ATGTGTATCTTCAAATCCTCTGCAACCCACTTGCTACTTCTTTCTCTGTTTTCGTTGCTAAGCTTTGCAAGTGAAGCAGCTCCAATATACAGCGCTCATGACTGCACAAATGGATCTTATTACCAACCCAACACAACTTTCCAAGCCAACTTAAAAGTCCTCCTCTCATCCCTTGTCTCCAACGCCACCCTCCACGACGGTTTCTACAGCACCAACATCTCCCTCGGAAACCCTGGCCAGGTCAAGGGACTCTTCCTCTGCCGCGGTGACGTCACCCCCACCGTCTGTCAACAGTGTGTCACCGCCGCAGCCATGAACATTACACGCTTCTGCACCAACCAAACAGAATCCATCATCTGGTACGACGTTTGTATGCTCCGTTACTCCGACAACTTCCCCTTAAACAACATAGTCCCAGGAATGAACTTAAAGGCCGATGATAGCGTCCCCAACTCAGACCTTACCCAGTTCAATGATTTACTGTCATCCACGTTGAATGATATAACACAGAAAGCTGTGAATTCTCCTTCGGATAAGAAGTTTGCTGCAAAAGAAGCAAATTTCACGAGCTCAATGAAGCTCTACACACTGGCACAGTGCACGCCCGATTTGTCCACTTTTGATTGTAACAGGTGTTTCTCAAGCGCCATTAGTGCTCTTCCAAATTGCTGTAGTGGGAAACGAGGTGCAAGAACCCTGCTTCCGAGTTGTAATATCAGATACGAATTGTACCCATTTTACAATGCCTCGGCGGTATCGACTCAACCAGAGCTTTCGTCTCCTTCATCAGGAAAAAGCAATATCTCTATAATTGTTGCGATTGTTGTCCCAATTGTTGTTGCCGTGGCACTTTTCATTCTCGGATGCTGCTTCCTGCGTAAGAGGGCAAGCAAGAAGTATAACATTGGGGATGATCTTATAGATGTGGAGTCCTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCGCAAACAGCTTCGCGGATGAGAACAAGATCGGCCAAGGTGGATTTGGCGTGGTTTATAAGGGTATCCTCCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCCTTGCAGGGTACAGTAGAGTTTACGAATGAAGCTATCCTTGTGGCTAAGCTTCAACATAGAAATTTAGTGAGGCTGTTGGGATTTTGCTTGGAGGGGCAGGAGAAGATGCTTATCTATGAATACATACCAAACAAAAGCCTCGATCGCTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAATATCATTGTTGGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTAGAATTATACATCGTGATCTCAAAGCTAGCAATGTTCTACTGGATGAAAAGATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGCCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCAGAATATGCATTGCGTGGACAATTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGATTTTTATCAAACTGGACATGCTGATGACCTCTTAAGCTATGTTTGGAAAAATTGGACAGAGCAAACACCTTTGGAATTGCTGGATCCAACCCTGAGAGATTCTTATTCAAGAAACGAAGTCATCAGATGCATCCATATTGGTTTATTGTGCGTTCAGGAAAATCCATCTGACAGGCCTTCGATGGCAACTATTTCACTTATGTTGAACAGTTATACAGTTACCATGTCATTACCTCGAAAGCCAGCATCTTTCCTGCATGGAAGAACACCTAACAGGCTAAAAAATGGGCTTGATTCTGATCAGTCCACCAACTGTTCAATTCCATCAATTCCGTGGTCTAATAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 1965 0.4377 MCIFKSSATHLLLLSLFSLLSFASEAAPIYSAHDCTNGSYYQPNTTFQANLKVLLSSLVSNATLHDGFYSTNISLGNPGQVKGLFLCRGDVTPTVCQQCVTAAAMNITRFCTNQTESIIWYDVCMLRYSDNFPLNNIVPGMNLKADDSVPNSDLTQFNDLLSSTLNDITQKAVNSPSDKKFAAKEANFTSSMKLYTLAQCTPDLSTFDCNRCFSSAISALPNCCSGKRGARTLLPSCNIRYELYPFYNASAVSTQPELSSPSSGKSNISIIVAIVVPIVVAVALFILGCCFLRKRASKKYNIGDDLIDVESLQFDLATVEAAANSFADENKIGQGGFGVVYKGILPNGQEIAVKRLSVTSLQGTVEFTNEAILVAKLQHRNLVRLLGFCLEGQEKMLIYEYIPNKSLDRFLFDPVKQRELDWSRRYNIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDEKMNPKISDFGMAKIFQPDQTQVNTGRIVGTYGYMSPEYALRGQFSVKSDVFSFGVLVLEIVSGKKNTDFYQTGHADDLLSYVWKNWTEQTPLELLDPTLRDSYSRNEVIRCIHIGLLCVQENPSDRPSMATISLMLNSYTVTMSLPRKPASFLHGRTPNRLKNGLDSDQSTNCSIPSIPWSNNEVSITEVYPR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00006 654 Pfam Protein tyrosine and serine/threonine kinase 329 594 IPR001245 GO:0004672|GO:0006468
Gabi3628g00006 654 CDD STKc_IRAK 332 598 - -
Gabi3628g00006 654 SUPERFAMILY Protein kinase-like (PK-like) 312 621 IPR011009 -
Gabi3628g00006 654 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Gabi3628g00006 654 Gene3D - 29 132 IPR038408 -
Gabi3628g00006 654 Gene3D - 144 246 IPR038408 -
Gabi3628g00006 654 Gene3D Transferase(Phosphotransferase) domain 1 402 607 - -
Gabi3628g00006 654 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00006 654 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Gabi3628g00006 654 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00006 654 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 293 401 - -
Gabi3628g00006 654 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 651 - -
Gabi3628g00006 654 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Gabi3628g00006 654 Pfam Salt stress response/antifungal 152 244 IPR002902 -
Gabi3628g00006 654 FunFam cysteine-rich receptor-like protein kinase 10 402 604 - -
Gabi3628g00006 654 FunFam Cysteine-rich receptor-like protein kinase 10 141 246 - -
Gabi3628g00006 654 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 132 - -
Gabi3628g00006 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Gabi3628g00006 654 Gene3D Phosphorylase Kinase; domain 1 289 401 - -
Gabi3628g00006 654 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00006 Gabi-Chr3628 18358 21372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00006 4 654 Receptor kinase-like Gene Family AT4G05200 48.225 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3628g00006 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00006 - - gmx:113000776 1002.28