Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00004 ATGTGTATCTTCAAATCCTCTGCAACCCACTTGCTACTTCTCTCTCTGTTTGCGTTATTAAGCTTTGCAAGTCAAGCAGCTCCAATATACAGCTATTCTGTGTGCACAAATGGATCTTATTACCAACCCAACACAACGTTCCAAGCCAACTTAAAAGTCCTCCTCTCATCCCTTGTCTCCAACGCCACCCTCCACGACGGTTTCTACAGCACCAACATCTCCCTCGGAAACCCTGGCCAGGTCAAGGGACTCTTTCTCTGCCGCGGTGACGTCACCCCCACCGTCTGTCAACAGTGTGTCACCGCCGCAGCCATGAACATTACACGCTTCTGCACCAACCAAACAGTCTCCATCATCTGGTACGACGTTTGTATGCTCCGTTACTCCTCCGACAGTACCTTAGACAACGTAGTCCCAGGAATAAACTTGGTGGCGGATGATAGTGTCCCTGACTCAGACTTTACCCAGTTCAATGATTTACTGGCATCCACGTTGAATGATATAACACAGAAAGCTGTGAATTCTCCTTCGGATAAGAAGTTTGCTGCAAAAGAAGCAGATTTCACGAGCTCAATGAAGCTCTACACACTGGCACAGTGCACGCCCGATTTGTCCACTTTTGAGTGTAACAAGTGTTTCTCAAGCGCCATTAGTGCTCTTCCAAGTTGCTGTAGTGGGAAACGAGGTGCAAGAACCCTGCTTCCGGGTTGTAATATCAGATACGAATTGTACCCATTTTACAATGCCTCCGCGGTATCGACTCAACCAGAGCTTTCGTCTCCTTCATCCGGAAAAAGCAATATCTCTATGATTGTTGCGATTGTTGTCCCAATTGTTGTTGTCGTGGCACTTTTCATTCTCGGATGCTGCTTCATGCGTAAGAGGGCAAGCAAGAAGTATAACAGTTTCAGACGGGACTCGATAGTTGGGGATGATCTTATAGATGTGGAGTCCTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCACAAACAGCTTCGCGGATGAAAACAAGATCGGCCAGGGTGGATTTGGTGTGGTTTATAAGGGTATCCTCCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCCTTGCAGGGTACAATAGAATTTATGAATGAAGCTATCCTTGTGGCTAAGCTTCAACATAGAAATTTAGTGAGGCTGTTGGGATTTTGCTTGGAGGGGCAGGAGAAGATGCTTATCTATGAATACATACCAAACAAAAGCCTTGATCGTTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATCATTGTTGATGAAAACATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCAGAATATGCAATGCGTGGACAATTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGATTTTTGTCAAACTAAACATGCCGATGACCTCCTAAGCTATGCTTGGAAAAATTGGACGGAGCAAACACCTTTGGAGTTGCTGGATCCAACCCTGAGAGGTTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTGTGCATTCAGGAAAATCCATCCGACAGGCCTTCGATGGCAACTATTTCACTTATGTTGAACAGTTATTCAGTTACCTTGTCATTACCTCGAAAACCAGCATCTTTCCTGCATGGAAGAACACCTAACAGGCTAAAAAATGGGCTTCATTCTGATGAGTCCGCCACCAGTTCAATTCTGTGGTCTAATAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 1890 0.4423 MCIFKSSATHLLLLSLFALLSFASQAAPIYSYSVCTNGSYYQPNTTFQANLKVLLSSLVSNATLHDGFYSTNISLGNPGQVKGLFLCRGDVTPTVCQQCVTAAAMNITRFCTNQTVSIIWYDVCMLRYSSDSTLDNVVPGINLVADDSVPDSDFTQFNDLLASTLNDITQKAVNSPSDKKFAAKEADFTSSMKLYTLAQCTPDLSTFECNKCFSSAISALPSCCSGKRGARTLLPGCNIRYELYPFYNASAVSTQPELSSPSSGKSNISMIVAIVVPIVVVVALFILGCCFMRKRASKKYNSFRRDSIVGDDLIDVESLQFDLATVEAATNSFADENKIGQGGFGVVYKGILPNGQEIAVKRLSVTSLQGTIEFMNEAILVAKLQHRNLVRLLGFCLEGQEKMLIYEYIPNKSLDRFLFDPVKQRELDWSRRYKIIVDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDFCQTKHADDLLSYAWKNWTEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCIQENPSDRPSMATISLMLNSYSVTLSLPRKPASFLHGRTPNRLKNGLHSDESATSSILWSNNEVSITEVYPR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00004 629 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 437 - -
Gabi3628g00004 629 SUPERFAMILY Protein kinase-like (PK-like) 319 608 IPR011009 -
Gabi3628g00004 629 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Gabi3628g00004 629 FunFam Cysteine-rich receptor-like protein kinase 10 293 408 - -
Gabi3628g00004 629 Gene3D - 28 132 IPR038408 -
Gabi3628g00004 629 Gene3D - 142 246 IPR038408 -
Gabi3628g00004 629 FunFam Os07g0555700 protein 460 581 - -
Gabi3628g00004 629 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Gabi3628g00004 629 FunFam Cysteine-rich receptor-like protein kinase 10 142 246 - -
Gabi3628g00004 629 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Gabi3628g00004 629 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Gabi3628g00004 629 ProSiteProfiles Protein kinase domain profile. 333 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00004 629 Gene3D Transferase(Phosphotransferase) domain 1 431 583 - -
Gabi3628g00004 629 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gabi3628g00004 629 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Gabi3628g00004 629 Gene3D Phosphorylase Kinase; domain 1 293 408 - -
Gabi3628g00004 629 Pfam Protein tyrosine and serine/threonine kinase 435 572 IPR001245 GO:0004672|GO:0006468
Gabi3628g00004 629 Pfam Protein tyrosine and serine/threonine kinase 336 421 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00004 Gabi-Chr3628 8556 12368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00004 4 629 Receptor kinase-like Gene Family AT4G05200 44.756 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3628g00004 PK_Tyr_Ser-Thr 4.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00004 - - gmx:547727 941.799