Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00003 ATGTGTATCTTCAAATCCTCTGCAACCCACTTGCTACTTCTCTCTCTGTTTGCGTTATTAAGCTTTGCAAGTCAAGCAGCTCCAATATACAGCTATTCTGTGTGCACAAATGGATCTTATTACCAACCCAACACAACGTTCCAAGCCAACTTAAAAGTCCTCCTCTCATCCCTTGTCTCCAACGCCACCCTCCACGACGGTTTCTACAGCACCAACATCTCCCTCGGAAACCCTGGCCAGGTCAAGGGACTCTTTCTCTGCCGCGGTGACGTCACCCCCACCGTCTGTCAACAGTGTGTCACCGCCGCAGCCATGAACATTACACGCTTCTGCACCAACCAAACAGTCTCCATCATCTGGTACGACGTTTGTATGCTCCGTTACTCCTCCGACAGTACCTTAGACAACGTAGTCCCAGGAATAAACTTGGTGGCGGATGATAGTGTCCCTGACTCAGACTTTACCCAGTTCAATGATTTACTGGCATCCACGTTGAATGATATAACACAGAAAGCTGTGAATTCTCCTTCGGATAAGAAGTTTGCTGCAAAAGAAGCAGATTTCACGAGCTCAATGAAGCTCTACACACTGGCACAGTGCACGCCCGATTTGTCCACTTTTGAGTGTAACAAGTGTTTCTCAAGCGCCATTAGTGCTCTTCCAAGTTGCTGTAGTGGGAAACGAGGTGCAAGAACCCTGCTTCCGGGTTGTAATATCAGATACGAATTGTACCCATTTTACAATGCCTCCGCGGTATCGACTCAACCAGAGCTTTCGTCTCCTTCATCCGGAAAAAGCAATATCTCTATGATTGTTGCGATTGTTGTCCCAATTGTTGTTGTCGTGGCACTTTTCATTCTCGGATGCTGCTTCATGCGTAAGAGGGCAAGCAAGAAGTATAACAGTTTCAGACGGGACTCGATTGGGGATGATCTTATAGATGTGGAGTCCTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCACAAACAGCTTCGCGGATGAAAACAAGATCGGCCAGGGTGGATTTGGTGTGGTTTATAAGGGTATCCTCCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCCTTGCAGGGTACAATAGAATTTATGAATGAAGCTATCCTTGTGGCTAAGCTTCAACATAGAAATTTAGTGAGGCTGTTGGGATTTTGCTTGGAGGGGCAGGAGAAGATGCTTATCTATGAATACATACCAAACAAAAGCCTTGATCGTTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATCATTGTTGGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTCTAATTATACATCGTGATCTAAAAGCTAGCAATGTTCTACTAGATGAAAACATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCAGAATATGCAATGCGTGGACAATTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGATTTTTGTCAAACTAAACATGCCGATGACCTCCTAAGCTATGCTTGGAAAAATTGGACGGAGCAAACACCTTTGGAGTTGCTGGATCCAACCCTGAGAGGTTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTGTGCATTCAGGAAAATCCATCCGACAGGCCTTCGATGGCAACTATTTCACTTATGTTGAACAGTTATTCAGTTACCTTGTCATTACCTCGAAAACCAGCATCTTTCCTGCATGGAAGAACACCTAACAGGCTAAAAAATGGGCTTCATTCTGATGAGTCCGCCACCAGTTCAATTCTGTGGTCTAATAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 1974 0.4392 MCIFKSSATHLLLLSLFALLSFASQAAPIYSYSVCTNGSYYQPNTTFQANLKVLLSSLVSNATLHDGFYSTNISLGNPGQVKGLFLCRGDVTPTVCQQCVTAAAMNITRFCTNQTVSIIWYDVCMLRYSSDSTLDNVVPGINLVADDSVPDSDFTQFNDLLASTLNDITQKAVNSPSDKKFAAKEADFTSSMKLYTLAQCTPDLSTFECNKCFSSAISALPSCCSGKRGARTLLPGCNIRYELYPFYNASAVSTQPELSSPSSGKSNISMIVAIVVPIVVVVALFILGCCFMRKRASKKYNSFRRDSIGDDLIDVESLQFDLATVEAATNSFADENKIGQGGFGVVYKGILPNGQEIAVKRLSVTSLQGTIEFMNEAILVAKLQHRNLVRLLGFCLEGQEKMLIYEYIPNKSLDRFLFDPVKQRELDWSRRYKIIVGIARGILYLHEDSQLLIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDFCQTKHADDLLSYAWKNWTEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCIQENPSDRPSMATISLMLNSYSVTLSLPRKPASFLHGRTPNRLKNGLHSDESATSSILWSNNEVSITEVYPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00003 657 CDD STKc_IRAK 338 604 - -
Gabi3628g00003 657 Gene3D - 143 246 IPR038408 -
Gabi3628g00003 657 Gene3D - 28 132 IPR038408 -
Gabi3628g00003 657 Gene3D Transferase(Phosphotransferase) domain 1 408 611 - -
Gabi3628g00003 657 Pfam Protein tyrosine and serine/threonine kinase 335 600 IPR001245 GO:0004672|GO:0006468
Gabi3628g00003 657 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00003 657 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Gabi3628g00003 657 SUPERFAMILY Protein kinase-like (PK-like) 318 636 IPR011009 -
Gabi3628g00003 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Gabi3628g00003 657 FunFam cysteine-rich receptor-like protein kinase 10 408 610 - -
Gabi3628g00003 657 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Gabi3628g00003 657 SMART serkin_6 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00003 657 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Gabi3628g00003 657 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Gabi3628g00003 657 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Gabi3628g00003 657 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gabi3628g00003 657 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Gabi3628g00003 657 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 293 407 - -
Gabi3628g00003 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 653 - -
Gabi3628g00003 657 FunFam Cysteine-rich receptor-like protein kinase 10 142 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00003 Gabi-Chr3628 8556 12368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00003 4 657 Receptor kinase-like Gene Family AT4G05200 48.521 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3628g00003 PK_Tyr_Ser-Thr 7.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00003 - - gmx:547727 1007.28