Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3628g00002 ATGTGTATCTTCAAATCCTCTGCAACCCACTTGCTACTTCTCTCTCTGTTTGCGTTATTAAGCTTTGCAAGTCAAGCAGCTCCAATATACAGCTATTCTGTGTGCACAAATGGATCTTATTACCAACCCAACACAACGTTCCAAGCCAACTTAAAAGTCCTCCTCTCATCCCTTGTCTCCAACGCCACCCTCCACGACGGTTTCTACAGCACCAACATCTCCCTCGGAAACCCTGGCCAGGTCAAGGGACTCTTTCTCTGCCGCGGTGACGTCACCCCCACCGTCTGTCAACAGTGTGTCACCGCCGCAGCCATGAACATTACACGCTTCTGCACCAACCAAACAGTCTCCATCATCTGGTACGACGTTTGTATGCTCCGTTACTCCTCCGACAGTACCTTAGACAACGTAGTCCCAGGAATAAACTTGGTGGCGGATGATAGTGTCCCTGACTCAGACTTTACCCAGTTCAATGATTTACTGGCATCCACGTTGAATGATATAACACAGAAAGCTGTGAATTCTCCTTCGGATAAGAAGTTTGCTGCAAAAGAAGCAGATTTCACGAGCTCAATGAAGCTCTACACACTGGCACAGTGCACGCCCGATTTGTCCACTTTTGAGTGTAACAAGTGTTTCTCAAGCGCCATTAGTGCTCTTCCAAGTTGCTGTAGTGGGAAACGAGGTGCAAGAACCCTGCTTCCGGGTTGTAATATCAGATACGAATTGTACCCATTTTACAATGCCTCCGCGGTATCGACTCAACCAGAGCTTTCGTCTCCTTCATCCGTTGGGGATGATCTTATAGATGTGGAGTCCTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCACAAACAGCTTCGCGGATGAAAACAAGATCGGCCAGGGTGGATTTGGTGTGGTTTATAAGGGTATCCTCCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCCTTGCAGGGTACAATAGAATTTATGAATGAAGCTATCCTTGTGGCTAAGCTTCAACATAGAAATTTAGTGAGGCTGTTGGGATTTTGCTTGGAGGGGCAGGAGAAGATGCTTATCTATGAATACATACCAAACAAAAGCCTTGATCGTTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATCATTGTTGGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTCTAATTATACATCGTGATCTAAAAGCTAGCAATGTTCTACTAGATGAAAACATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCAGAATATGCAATGCGTGGACAATTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGATTTTTGTCAAACTAAACATGCCGATGACCTCCTAAGCTATGCTTGGAAAAATTGGACGGAGCAAACACCTTTGGAGTTGCTGGATCCAACCCTGAGAGGTTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTGTGCATTCAGGAAAATCCATCCGACAGGCCTTCGATGGCAACTATTTCACTTATGTTGAACAGTTATTCAGTTACCTTGTCATTACCTCGAAAACCAGCATCTTTCCTGCATGGAAGAACACCTAACAGGCTAAAAAATGGGCTTCATTCTGATGAGTCCGCCACCAGTTCAATTCTGTGGTCTAATAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 1842 0.4397 MCIFKSSATHLLLLSLFALLSFASQAAPIYSYSVCTNGSYYQPNTTFQANLKVLLSSLVSNATLHDGFYSTNISLGNPGQVKGLFLCRGDVTPTVCQQCVTAAAMNITRFCTNQTVSIIWYDVCMLRYSSDSTLDNVVPGINLVADDSVPDSDFTQFNDLLASTLNDITQKAVNSPSDKKFAAKEADFTSSMKLYTLAQCTPDLSTFECNKCFSSAISALPSCCSGKRGARTLLPGCNIRYELYPFYNASAVSTQPELSSPSSVGDDLIDVESLQFDLATVEAATNSFADENKIGQGGFGVVYKGILPNGQEIAVKRLSVTSLQGTIEFMNEAILVAKLQHRNLVRLLGFCLEGQEKMLIYEYIPNKSLDRFLFDPVKQRELDWSRRYKIIVGIARGILYLHEDSQLLIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDFCQTKHADDLLSYAWKNWTEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCIQENPSDRPSMATISLMLNSYSVTLSLPRKPASFLHGRTPNRLKNGLHSDESATSSILWSNNEVSITEVYPR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3628g00002 613 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Gabi3628g00002 613 FunFam Cysteine-rich receptor-like protein kinase 10 252 363 - -
Gabi3628g00002 613 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Gabi3628g00002 613 Gene3D - 28 132 IPR038408 -
Gabi3628g00002 613 Gene3D - 142 246 IPR038408 -
Gabi3628g00002 613 Gene3D Transferase(Phosphotransferase) domain 1 364 567 - -
Gabi3628g00002 613 FunFam Cysteine-rich receptor-like protein kinase 10 142 246 - -
Gabi3628g00002 613 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 609 - -
Gabi3628g00002 613 Pfam Protein tyrosine and serine/threonine kinase 291 556 IPR001245 GO:0004672|GO:0006468
Gabi3628g00002 613 SMART serkin_6 288 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00002 613 ProSiteProfiles Protein kinase domain profile. 288 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3628g00002 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Gabi3628g00002 613 Gene3D Phosphorylase Kinase; domain 1 250 363 - -
Gabi3628g00002 613 FunFam cysteine-rich receptor-like protein kinase 10 364 566 - -
Gabi3628g00002 613 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Gabi3628g00002 613 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Gabi3628g00002 613 CDD STKc_IRAK 294 560 - -
Gabi3628g00002 613 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gabi3628g00002 613 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Gabi3628g00002 613 SUPERFAMILY Protein kinase-like (PK-like) 274 592 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3628g00002 Gabi-Chr3628 8556 12368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3628g00002 4 613 Receptor kinase-like Gene Family AT4G05200 46.746 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3628g00002 PK_Tyr_Ser-Thr 6.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3628g00002 - - gmx:547727 951.044