Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3623g00003 ATGTCAAAAATTGGATACTGGGCAAGATATATTCTTGCTTCCACTTTGTCAAACTCATTTGATTGCTGGGAAGATGGCTTACTGCTTCTTGCTTTGAGTGTTACAGACTTACACCCATTCGTCGTACTCTTGTTTCTTTATATTTGCAACCCGATATTCTTGCTTCCACTTCTTGAAAATTCTATGTTAAGGCCGTTTATTGAGTTATCAAATTCTCCATTGTTATCAGATTCTCAATTGTTATCGTCATTCTCCACTATCAAAATTATCATGAATAGATTGTATGATGGCCTTGCTAAAGTTCTTTTCATCCTACTTGAAAGGCCAGATACTAGTGAAAATGTACTTGAGTACGTTGCGGAGGTGATAAATTTAAGTGCTGATCCAATGGATGACAACACTTTACGGGCAGGCACGCTTTTAAGTGTCAGTGCCGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGTTTGATCCAAAATACGTACATTGTTCAAACCGTTTGAAGCTAAGTGGGTTGGCTGCTCGTCGTATATCATCATCAGAAGAAGTTTCTGAATGGCTTGATAGTAAATACCCAGCTAAGGCTGAGGGGATCAATCAATATAATGATGCTCAACAATCTCAAGACGCCAGCAGTTCTCATGATGAAATTTGCGAAAGGTTCTTTTTAACTGCAAGAGTCCTCAACTTAGGCCTTATAAATGCATTTATTGAGTACGAATATTTAGTTCAGGTTAATAGTGCGTGTGGTAAAGGTGTTCGTGAATTGGAACGACGCCTGTTTTACTCTCGCAAAATGCTTCGTTATGAAGCTCAGTTATTGGAGGATAATAAACTGATTGGGAATGCACTTTCCTTCTACCGCGTGATGATTGTTTGGCTTCTTGACTTGGTTGGGGGAGCTAAGATGCCTCTACCACCAATTTTCCCAATGGAATTTGCTGCCCTACCGCAGTTTTTTGTATTAGATGCCATGGAAGTTCTAATATTTGCTTCTTGGATTCCAAAGGCATTAGATGGAGTGATGCTGGAGGAGTTCATGGATTTTATTGTTATGTTCATGGCCAGCCCTGAATTTATCAAAAATCAATATCTTAGTGAAAAAATGGTGAAAGTCTTGAACTGTTGGATGCCCAGTAAGAGCTTATCTACTACAGCTACTCTATTTGAAGGGCACCAATTGTCTCTTGAGTATCTTGTGAGGAATCTTCTAAAACTTTATGTTGACAGTGAGTTCACTAGTTCTGTACATGAGTTCAAAGACTTCCACCGTCATATAGCTGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCATCGTGATGCTTGGAGACAGATTGTTGAAGAGGAGGAAAAGGACGTCTTTCTGAATTTCTTGAACTTTCTGATTGATAATAGTATTAATCTATTTGATGAAAGTCTGCACCAAATTCTTGATCACAAAAGGCAGGCAGTTGTAGCGGCTGAAGAGTTTACAAAGGTGAGTTTTTGGTCTAATATTATTCGGGTTGTTATTGGGTTGGTAAGTGAACATCTCAGGCTGCTTGCATTTGCTTCGGAGCATTTTACTGCTCCATTCCTTCTTCCTGAGATGGTTGGAAGTGTGGCTAGCAGGCTCAATCGCTTTTTGCTGCAATTGGTGAGTCCTCAGAGACAATTTCTTACTCTAGAAGACCACGAAATTTACGAATCTCGTCCAAAGAATTTGCTAAAGCAGATTGGGCGAGTATATGTTCATCTGGCTAGAGGTGACACAAAGTCCGTCTTCCCGGCTGCCATTTCAAAGGATAGTCAATCATATAATGATGAGTTGTTTTTTGCTGCAGCAAATGTCCTGTACAATTACAGAATTGATGATGGCGATGAGAGAATTTTCAGGGAATTTATTCAACTTGGTGCTAAAGCTAAATTTGCAGCTTCAGAGGCAGATGCCATGTATACCGAAGCTACTCTAGGAGAAATACCAGATGAATTCATTGATCCAATTAATCGCACCTTGATGAAAGATCCAGTTCTGTTACCTCCCCCTTCAAACACGATAATTGATCGATCTGTCATTCAGAGGCTTCTTCTTACTAATAATACTGACCCATTTACCCGTTTGGCACTCACTGCGGATATGCTGCGACCTGCTGGTGTACTAAAAGCAAAAATTGAGGAGTTTGTAAGATCTCGAATGAAGGATAGTAAATAA 2214 0.397 MSKIGYWARYILASTLSNSFDCWEDGLLLLALSVTDLHPFVVLLFLYICNPIFLLPLLENSMLRPFIELSNSPLLSDSQLLSSFSTIKIIMNRLYDGLAKVLFILLERPDTSENVLEYVAEVINLSADPMDDNTLRAGTLLSVSAVMLRLCEPFLDANLTKRFDPKYVHCSNRLKLSGLAARRISSSEEVSEWLDSKYPAKAEGINQYNDAQQSQDASSSHDEICERFFLTARVLNLGLINAFIEYEYLVQVNSACGKGVRELERRLFYSRKMLRYEAQLLEDNKLIGNALSFYRVMIVWLLDLVGGAKMPLPPIFPMEFAALPQFFVLDAMEVLIFASWIPKALDGVMLEEFMDFIVMFMASPEFIKNQYLSEKMVKVLNCWMPSKSLSTTATLFEGHQLSLEYLVRNLLKLYVDSEFTSSVHEFKDFHRHIAELLEYLWQVPSHRDAWRQIVEEEEKDVFLNFLNFLIDNSINLFDESLHQILDHKRQAVVAAEEFTKVSFWSNIIRVVIGLVSEHLRLLAFASEHFTAPFLLPEMVGSVASRLNRFLLQLVSPQRQFLTLEDHEIYESRPKNLLKQIGRVYVHLARGDTKSVFPAAISKDSQSYNDELFFAAANVLYNYRIDDGDERIFREFIQLGAKAKFAASEADAMYTEATLGEIPDEFIDPINRTLMKDPVLLPPPSNTIIDRSVIQRLLLTNNTDPFTRLALTADMLRPAGVLKAKIEEFVRSRMKDSK 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3623g00003 737 FunFam Ubiquitin conjugation factor e4 a 660 737 - -
Gabi3623g00003 737 Pfam Ubiquitin elongating factor core 75 638 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Gabi3623g00003 737 SUPERFAMILY RING/U-box 655 730 - -
Gabi3623g00003 737 ProSiteProfiles U-box domain profile. 660 735 IPR003613 GO:0004842|GO:0016567
Gabi3623g00003 737 SMART Ubox_2 664 728 IPR003613 GO:0004842|GO:0016567
Gabi3623g00003 737 PANTHER UBIQUITINATION FACTOR E4 76 735 IPR045132 GO:0000151|GO:0030433|GO:0034450
Gabi3623g00003 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 736 IPR013083 -
Gabi3623g00003 737 Pfam U-box domain 661 732 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3623g00003 Gabi-Chr3623 32034 39417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3623g00003 78 737 U-box Gene Family AT5G15400 53.846 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3623g00003 K10597 - gmx:100811444 729.169