Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi361g00012 ATGGGAGGTGAAGGAAGGAGTTCGAGGAAGGACAAGAAGAAGCCAAAATCTGGGGGCTTTGAGTCACTAGGTCTGAGTCCGAATGTGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCAATTCAGAGGAAGACCATGCCTCTCATCCTTTCTGGCTCTGACATTGTGGCCATGGCTCGTACCGGCTCTGGCAAAACGGCTGCGTTTCTTGTCCCAATGATACACCGCCTCAACCAGCATCTTCCTCAGGGTGGAGTTAGAGCCCTCATTTTGTCCCCTACTAGGGACTTGGCCCTTCAGACTCTCAAATTCACCAAGGAGCTTGGTCACTTCACAGACCTTCGTGTGAGTTTGTTAGTTGGCGGAGATAGTATGGAAAGTCAGTTTGAGGAGCTGGCTCAGAGTCCTGACATTATAATAGCCACTCCTGGTAGGCTTATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGTAGCGTTGAGTATGTTGTTTTTGACGAGGCTGATTGTTTGTTCGGCATGGGTTTTGCTGAGCAGTTGCATAAAATTCTTGCTCAGCTTGGTGAGAACCGTCAGACACTGCTCTTCAGTGCTACGTTACCCAGCGCCCTTGCAGAGTTTGCTAAGGCCGGTTTGCGAGACCCTCAGCTTATCCGGCTTGATTTGGAAACTAAAATTAGCCCAGACTTGAAGCTTGCCTTTTTCACTTTGAGGCAGGAAGAGAAGTGTGCGGCATTGCTTTATTTGATTAGGGAGCATATTGGTTCTGATGAGCAGACATTAATTTTTGTATCCACAAAACATCATGTGGAGTTTCTTAATGTATTGTTTCGAGAAGAGGGTATTGAGCCATCTGTATGTTATGGCGACATGGATCAAGATGCACGCAAAATCCATGTATCAAGGTTTAGGGCTAGAAAGACCATGTTGTTGATTGTTACAGACGTGGCAGCTAGGGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCTCCAAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGTTGCAAGGGCTGGTCGTACTGGTACTGCTTATTCTTTCTTGACTTCAGAGGATTTGGCTTACCTTTTGGATCTTCATTTGTTTCTCTCAAAACCTATCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGATGGAGTAATGTCAAAGACTGACCAGGCAATGGCAAATGGGGAAACCATTTATGGTCGTTTCCCCCAAAAAGTCATTGACCTTGTTTCAGACAGAGTTAGGGAAGTTATCGATACTTCTGCAGAACTGGAATCATTGCTGAAAACCTGTACAAATGCATTTCGGTTATACTCAAAAACAAAACCCTTACCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCCCGTGAAGGGCTGCATCCAATTTTCCAGAATGTGTTGGAAAGGGGGGAGTTAATGGCACTTGCATTTTCGGAGCATTTGAAGAATTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCCAAGCATGTACAGGGCCCTTCTGGCCAATGGGTTGATGTGATGAAAAGGAAAAGAGCTATTCATGAAAATATTATAAACTTGGTTCATGAGCAGCATTCTAAGAGTAACATCGAAAAGGAAATTCAATCAGAAATCACTCCTTCCATGGAAAAAAGGAGAAAAGCAGCATGTGGTTCTAAGAGAAAGCCACAAAGTTTTAAGGATGAGGATTACTATATAAGTTCAATACCTAAAAATCAACACATGGAAGCAGGCCTTGCAGTGAAAGCTAATGAAGACTTTGCTTCAAATAGGTTGGAAGCAGCTGTCCTGGATCTAGTTGCAGATGATGGCTCTGGCATTCAGAAACAAAGATCCATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTGAACAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAGAACGAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCGCACAGTAAGATATCTCTTAAGGGGACAAATAATGCTGGTGATGCTCAGGAATCAAGATCATACCGAGGAGGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCAGTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGCAAAAAGCCAACAGAATTTCTTATATGAAGAGCAAGTCTCCAAAGGGTAAAAAATTTGGCAAAAATGGGAAAAAAAGAAAAGGCCCCAGAAATTAA 2325 0.4353 MGGEGRSSRKDKKKPKSGGFESLGLSPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDIVAMARTGSGKTAAFLVPMIHRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLIRLDLETKISPDLKLAFFTLRQEEKCAALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAYSFLTSEDLAYLLDLHLFLSKPIKAAPTEEEVLQDMDGVMSKTDQAMANGETIYGRFPQKVIDLVSDRVREVIDTSAELESLLKTCTNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFQNVLERGELMALAFSEHLKNFRPKQTILEAEGEAAKSKHVQGPSGQWVDVMKRKRAIHENIINLVHEQHSKSNIEKEIQSEITPSMEKRRKAACGSKRKPQSFKDEDYYISSIPKNQHMEAGLAVKANEDFASNRLEAAVLDLVADDGSGIQKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGARTKATKTGIYKKWKERSHSKISLKGTNNAGDAQESRSYRGGRRNFKGSKKQQSMPNAHVRSEIKDMDQIRKERQQKANRISYMKSKSPKGKKFGKNGKKRKGPRN 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi361g00012 774 SMART helicmild6 275 356 IPR001650 -
Gabi361g00012 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Gabi361g00012 774 MobiDBLite consensus disorder prediction 729 748 - -
Gabi361g00012 774 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Gabi361g00012 774 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Gabi361g00012 774 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 395 IPR001650 -
Gabi361g00012 774 CDD SF2_C_DEAD 241 365 - -
Gabi361g00012 774 Pfam DBP10CT (NUC160) domain 623 684 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gabi361g00012 774 SMART DBP10CT_2 623 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gabi361g00012 774 MobiDBLite consensus disorder prediction 688 774 - -
Gabi361g00012 774 SMART ultradead3 37 244 IPR014001 -
Gabi361g00012 774 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Gabi361g00012 774 Gene3D - 4 225 IPR027417 -
Gabi361g00012 774 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 688 - -
Gabi361g00012 774 CDD DEADc_DDX54 18 223 IPR033517 -
Gabi361g00012 774 Gene3D - 237 471 IPR027417 -
Gabi361g00012 774 MobiDBLite consensus disorder prediction 754 774 - -
Gabi361g00012 774 MobiDBLite consensus disorder prediction 1 18 - -
Gabi361g00012 774 MobiDBLite consensus disorder prediction 1 23 - -
Gabi361g00012 774 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi361g00012 Gabi-Chr361 144539 152068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi361g00012 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.458 8.05e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi361g00012 K14808 - gmx:100806274 1315.06