Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3618g00002 ATGGCACAAGCACCATCTTCTTCTTCTTTTACCCACACATACACTTATGATGTCTTTCTTAGCTTTCGTGGTGAAGATACCCGCACTGGTTTTACTGGCAATCTTTATAGTGCTTTGAGTCAAAGAGGAGTCTTGACCTTCATGGATGATTATGATCTAAATAAAGGGGAAGACATTACACCTTCTCTCCTCAATGCAATACAAAAGTCCAGGATGTCCTTTGTTATTTTCTCCAAAAACTATGCATCCTCAACATTTTGTTTGAACGAACTTGGCCAGATCCTTGAGTGTTACACAAAGCAAAAGATGTTGATTTGGCCAATTTTCTATGATGTAGATCCCTCAGAAGTGAGATATCAAAAGGGTAGTTATGGTGAAGCATTCGCCAAGTACGAACAGGAAAGATTCAAGAATGACATAGAGAAGGTTAAAAAATGGAGGTTGGCTTTGCGTCGAGTTGCTGATTTGTCTGGTTCTCATTTCAAACATGGGGGAGGAGAATATGAGCATGTGTTCATCCGAAATATAATAGAAAGGGTCTCTCGCAAGCTTAATCGACCTCTTTTGCAAATTGCTGATTACCCTATTGGATTGGAAGCTCGTATTCGAAATGCACTGTCGGTTATGGGTGCTGAATTTGATAACAAAGTCAACATGCTTGGGATTCATGGTATCGGAGGAATAGGTAAATCAACTATTGCACGTGCTATATATAATTTGATAGCACATCAATTTGAAGGTTCATGTTTTCTTGCTAATATTAGAGAAAAGTCAACTAGGCATGGCCTAGAACAGATCCAAGAGACAATGCTTTGTGAACTAATTGGGGAGCGAAATTTCAAGTTGGGAGATGTGAACCAAGGAATTCAAATATTAAAAGAAAGACTTCAACAAAAGAAAGTGCTTCTTATTCTTGATGATGTTGACAAAAGGGAACAGCTACAAGCAACTGCTGGAGGAATTGATTGGTTTGGTTCTGGCAGCACTATCATCATAACAACAAGGGATAAGCATTTGTTAGATATCCATGGTGTGAAAAATCTCTCTGAGGTTAAAAAACTCAATGATATTGAAGCTCTTGAATTGTTTAGCTGGAATGCTTTAAAAAATAAACAAGTTCACCCAAGTTACATGGAAATCATAAAGCGTGCAGTACATTATGGCAGTGGCCTTCCATTGGCTTTGGAAACAATAGGTTCAAACTTATTTGGTAAAGCATTAGATGAATGGAAATCAGCACTAGAAGCATATGAAGGAATTCCCAATAAAGATATTCAAGATATTCTTAAAGTTAGTTATGATGGCTTGGAGGAAAATGAAAAGGAAATTTTTCTTGACATAGCTTGCTTCTTCAAAGGATGCAGTGTGAGATACATTAGCAGTGTGCTACAAGCACGTGGTTTTCACCCTAAATATGGTATAATGGTGAAATTAGTGTGA 1440 0.3764 MAQAPSSSSFTHTYTYDVFLSFRGEDTRTGFTGNLYSALSQRGVLTFMDDYDLNKGEDITPSLLNAIQKSRMSFVIFSKNYASSTFCLNELGQILECYTKQKMLIWPIFYDVDPSEVRYQKGSYGEAFAKYEQERFKNDIEKVKKWRLALRRVADLSGSHFKHGGGEYEHVFIRNIIERVSRKLNRPLLQIADYPIGLEARIRNALSVMGAEFDNKVNMLGIHGIGGIGKSTIARAIYNLIAHQFEGSCFLANIREKSTRHGLEQIQETMLCELIGERNFKLGDVNQGIQILKERLQQKKVLLILDDVDKREQLQATAGGIDWFGSGSTIIITTRDKHLLDIHGVKNLSEVKKLNDIEALELFSWNALKNKQVHPSYMEIIKRAVHYGSGLPLALETIGSNLFGKALDEWKSALEAYEGIPNKDIQDILKVSYDGLEENEKEIFLDIACFFKGCSVRYISSVLQARGFHPKYGIMVKLV 479
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3618g00002 479 SMART AAA_5 216 355 IPR003593 GO:0016887
Gabi3618g00002 479 Pfam NB-ARC domain 214 423 IPR002182 GO:0043531
Gabi3618g00002 479 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
Gabi3618g00002 479 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 158 IPR035897 -
Gabi3618g00002 479 Pfam TIR domain 16 186 IPR000157 GO:0007165
Gabi3618g00002 479 SMART till_3 15 156 IPR000157 GO:0007165
Gabi3618g00002 479 PRINTS Disease resistance protein signature 388 402 - -
Gabi3618g00002 479 PRINTS Disease resistance protein signature 219 234 - -
Gabi3618g00002 479 PRINTS Disease resistance protein signature 295 309 - -
Gabi3618g00002 479 Gene3D - 189 348 IPR027417 -
Gabi3618g00002 479 Gene3D - 353 437 IPR042197 -
Gabi3618g00002 479 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 186 - -
Gabi3618g00002 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 447 IPR027417 -
Gabi3618g00002 479 Gene3D - 13 188 IPR035897 -
Gabi3618g00002 479 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 456 IPR044974 GO:0006952
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3618g00002 Gabi-Chr3618 10908 18919 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3618g00002 217 476 WRKY Transcription Factor Family AT5G45050 36.604 1.09e-43 163