Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3617g00007 ATGGCGGAAGAGAGATTCACCGGCGTTGTGCAGTGGTTCAACAATCCCAAGGGCTTTGGTTTTATCAAACCCGATGATGGAGGAGAAGATCTCTTCGTTCACCAATCTTCCATCAGATCCGAAGGCTACCGAACCCTTCTAGAAGGAGATCGTGTCGAATTCGCCATTGCTACTGGCGACAACGACAAGACCAAAGCCATCGACGTCACCGGTCCCGACGGCGCTCCTCTCCAGTCCAGGAAGGACAACTACGGCGGCGCCGGAGGTCGCGGCGGTGGATACGGATTTGGCGGTGGATGGAGGGGCGGCGATAGGCGCAATGGCGGTGGCGGAGCTGGTGGTGGCGGCTGGGGAAGCAATAGCGGCGGTGGCGGTGGTTCCGGCGGTGGCAGCGGATCTTGCTATAGGTGTGGTGGGTTTGGGCACATGGCGAGGGATTGCGCCACTGCTAGGGGTGGCAATGGCGGTGGCGGTGGCGGTGGAAGGTATGACGGTGGTAACAATGGTGGCGGTGGCGGTGGTGGAAAAAACACATGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGCGTTGAAGCCTCTGGGTGA 594 0.5926 MAEERFTGVVQWFNNPKGFGFIKPDDGGEDLFVHQSSIRSEGYRTLLEGDRVEFAIATGDNDKTKAIDVTGPDGAPLQSRKDNYGGAGGRGGGYGFGGGWRGGDRRNGGGGAGGGGWGSNSGGGGGSGGGSGSCYRCGGFGHMARDCATARGGNGGGGGGGRYDGGNNGGGGGGGKNTCFNCGKPGHFARECVEASG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3617g00007 197 SUPERFAMILY Retrovirus zinc finger-like domains 163 193 IPR036875 GO:0003676|GO:0008270
Gabi3617g00007 197 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Gabi3617g00007 197 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Gabi3617g00007 197 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Gabi3617g00007 197 Gene3D - 172 197 - -
Gabi3617g00007 197 Gene3D - 117 158 - -
Gabi3617g00007 197 SMART csp_8 7 72 IPR011129 GO:0003676
Gabi3617g00007 197 MobiDBLite consensus disorder prediction 65 88 - -
Gabi3617g00007 197 ProSiteProfiles Zinc finger CCHC-type profile. 134 147 IPR001878 GO:0003676|GO:0008270
Gabi3617g00007 197 Pfam Zinc knuckle 177 192 IPR001878 GO:0003676|GO:0008270
Gabi3617g00007 197 Pfam Zinc knuckle 133 148 IPR001878 GO:0003676|GO:0008270
Gabi3617g00007 197 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Gabi3617g00007 197 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Gabi3617g00007 197 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 194 - -
Gabi3617g00007 197 SUPERFAMILY Retrovirus zinc finger-like domains 116 153 IPR036875 GO:0003676|GO:0008270
Gabi3617g00007 197 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Gabi3617g00007 197 Gene3D - 1 83 IPR012340 -
Gabi3617g00007 197 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Gabi3617g00007 197 SMART c2hcfinal6 178 194 IPR001878 GO:0003676|GO:0008270
Gabi3617g00007 197 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Gabi3617g00007 197 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Gabi3617g00007 197 ProSiteProfiles Zinc finger CCHC-type profile. 179 192 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3617g00007 Gabi-Chr3617 45944 47024 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gabi3617g00007 CSD 1.1e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3617g00007 K09250 - gmx:106796585 183.341