Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3617g00006 ATGGCGGAAGAGAGATTCACCGGCGTTGTGCAGTGGTTCAACAATCCCAAGGGCTTTGGTTTTATCAAACCCGATGATGGAGGAGAAGATCTCTTCGTTCACCAATCTTCCATCAGATCCGAAGGCTACCGAACCCTTCTAGAAGGAGATCGTGTCGAATTCGCCATTGCTACTGGCGACAACGACAAGACCAAAGCCATCGACGTCACCGGTCCCGACGGCGCTCCTCTCCAGTCCAGGAAGGACAACTACGGCGGCGCCGGAGGTCGCGGCGGTGGATACGGATTTGGCGGTGGATGGAGGGGCGGCGATAGGCGCAATGGCGGTGGCGGAGCTGGTGGTGGCGGCTGTTATCATTGTGGTGATTTTGGGCACTTGGCTAGGGATTGCAACCGGAGTAACAATTCCGGAGGTGGTGCATGTTACAATTGTGGCGAATTTGGGCACCTTGCGAGGGATTGCATGCGGGGAAGCAATAGCGGCGGTGGCGGTGGTTCCGGCGGTGGCAGCGGATCTTGCTATAGGTGTGGTGGGTTTGGGCACATGGCGAGGGATTGCGCCACTGCTAGGGGTGGCAATGGCGGTGGCGGTGGCGGTTGCTTTCGATGTGGGGAAGTTGGTCACCTGGCCAGGGATTGCAGCATGGAAGAAGGTGGAAGGTATGACGGTGGTAACAATGGTGGCGGTGGCGGTGGTGGAAAAAACACATGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGCGTTGAAGCCTCTGGGTGA 768 0.5742 MAEERFTGVVQWFNNPKGFGFIKPDDGGEDLFVHQSSIRSEGYRTLLEGDRVEFAIATGDNDKTKAIDVTGPDGAPLQSRKDNYGGAGGRGGGYGFGGGWRGGDRRNGGGGAGGGGCYHCGDFGHLARDCNRSNNSGGGACYNCGEFGHLARDCMRGSNSGGGGGSGGGSGSCYRCGGFGHMARDCATARGGNGGGGGGCFRCGEVGHLARDCSMEEGGRYDGGNNGGGGGGGKNTCFNCGKPGHFARECVEASG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3617g00006 255 Gene3D - 230 255 - -
Gabi3617g00006 255 Gene3D - 194 221 - -
Gabi3617g00006 255 MobiDBLite consensus disorder prediction 65 84 - -
Gabi3617g00006 255 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Gabi3617g00006 255 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Gabi3617g00006 255 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Gabi3617g00006 255 ProSiteProfiles Zinc finger CCHC-type profile. 173 186 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 ProSiteProfiles Zinc finger CCHC-type profile. 200 213 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SMART csp_8 7 72 IPR011129 GO:0003676
Gabi3617g00006 255 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Gabi3617g00006 255 Pfam Zinc knuckle 235 250 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 Pfam Zinc knuckle 116 130 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 Pfam Zinc knuckle 172 187 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 Pfam Zinc knuckle 140 155 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 Pfam Zinc knuckle 199 214 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 ProSiteProfiles Zinc finger CCHC-type profile. 141 154 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Gabi3617g00006 255 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Gabi3617g00006 255 PANTHER COLD SHOCK DOMAIN PROTEIN 2 190 252 - -
Gabi3617g00006 255 ProSiteProfiles Zinc finger CCHC-type profile. 237 250 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SUPERFAMILY Retrovirus zinc finger-like domains 107 156 IPR036875 GO:0003676|GO:0008270
Gabi3617g00006 255 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Gabi3617g00006 255 Gene3D - 111 159 - -
Gabi3617g00006 255 Gene3D - 1 83 IPR012340 -
Gabi3617g00006 255 SMART c2hcfinal6 236 252 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SMART c2hcfinal6 199 215 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SMART c2hcfinal6 172 188 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Gabi3617g00006 255 PRINTS Eggshell protein signature 188 198 - -
Gabi3617g00006 255 PRINTS Eggshell protein signature 97 108 - -
Gabi3617g00006 255 PRINTS Eggshell protein signature 228 246 - -
Gabi3617g00006 255 PRINTS Eggshell protein signature 160 175 - -
Gabi3617g00006 255 SUPERFAMILY Retrovirus zinc finger-like domains 164 215 IPR036875 GO:0003676|GO:0008270
Gabi3617g00006 255 Gene3D - 160 193 - -
Gabi3617g00006 255 ProSiteProfiles Zinc finger CCHC-type profile. 117 130 IPR001878 GO:0003676|GO:0008270
Gabi3617g00006 255 SUPERFAMILY Retrovirus zinc finger-like domains 219 251 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3617g00006 Gabi-Chr3617 45944 47024 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gabi3617g00006 CSD 1.9e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3617g00006 K09250 - gmx:106796585 333.954