Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3615g00061 ATGGAGAGCTCGTGGCAGATGAAATGTGATTCGCCATTTCAGCAATCGGCATCTGTGGCGGTTTCGTCTGCACCGTTGCAGGAGCCTAGGGGTCAGATGGAGATGAATGCTGGCCATTGTCTTTATCCACGAGTTTCTCATGGTTTAAGATCAAAATTTGTTGGAGGGATGCAAGACCCTGTTTGCCCCAGCTTTCTTTATTCAACCAATCAAGGATCAGTCCATAACAATGCTGGAAATTCATTTCTTCCTCTCCTTAATGGTCCTCCATCGTTGTTACAGGGTGGTTCCAATGGGTTGTCCGATCGAAAGCTTTGCACCTCATCTGGTAATTGTACTGCTGCTAGTGGGAATTCTATTGTTGATTCTATAGAAAGTGGAAACTTCCTAACATCCAGTGGGGGGCTGATAACAGAAAATTTAGTGATTCATAACCTGCAAAGCTGGGCAGATACTTTTCCTGATAATTCTTACAGGGAAATGGTTGGTCCGAGTAGTGGTAGTAATTTTGTATTTCATGATATTCAGAGTAGTAATACTGCTGCCCAGCCCACAGTTCCTGGTGGCGAGAAGGCAAAGGAGCCTTTTTCTTCTATGGGGCAATGCTATAGTACAAGCCTTGCATCTAGTCTAAATGTTTGCCGCTCAGATATTCAAACTACATCAAATATGGCTTTGGAACAGTGCTCGTCTAAGCATGCAACTCCTTTTATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGGAAAAGTGGTCATCTTCTTCTCAGCAATACAGGGCTTCTTGGTATTGTTTGCTCATGCCATTGTTGCCACATGTCCGTCCTCAAGTTTTGTGAGCATTCAGGGTTACATGGTGTCAACCCAGGGGATGCGGTTCGTATGGAAAGTGGTGAGACCATTGCGCAATGGCAGAAGTTATACTTCTTGAAGTTTGGGATTAGGTCTCGGGGAAATGAGAGTGAATGGGACTGGCCCGACGTATTATCAGCAACAGGCAGTCTGCTGAAATCCAACTCATCTGCATCTGATATGTCCAAGAGTGATTTGTCTCATATTTTGAGTTCATCTGCTGTTATATTAAGGTCTGGAAAGTCTTCTGACTGTGTTATGTTTCCGAAGAATACAGACCACAATTTATTTACTGGTCCATCATCCAGAAAACAACCGACAACAATCCAAGATGGTTGCAACATTCCGTTCAAAGGTTGTACTGGTATTTCACAAAGCAACTTGTATGACCGGGTGAAAAGCCAATTAATGGAATCTAATCTGGCTATGTACACAACTTCACCAAACTTTGTTGGAACTCAACTGGATGATGGTTGCCAGCCTATGCCCCCTTTCCTTGATTCTCTTAAAAGGAATGGAAATTTGTCAATTGCCCACTCTCCTTCACAAACTCCAACAAGCCTTCTGAAAGACCTTGAATGCATAAAAAAGAAGAATGCCAAGGATGGTCTTGTAGGCAGAGATGCAGCTTCCTCTAATATTGAGCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCCAGTTCCATCATTTATAGAACCACCAGAGTTTACTGCCCTTGCCAGTCCTCCGAAATTGCAACCTCTGAAGCAGATGATTAATAACCTCAGCAGCGAGGAGGAATTGCAGAATAGTTTTAGCTATGCTGCTGGTTCATTCAAAATGGTCGAAGAGCAACCTCAGCTTAAACCCAGGAACTATATGTCTGGTGTTAGTAATGCTTCTGGTGCTGCTAGAGCTAGATCAGAAACTGTCAATGTGGCCAAGGGTTTATCATTTTCACCATTTCCACAGTTTACTCCTCCACCCAAGGGAAAGACAAAAGCAAGTGAAAATTTGGTGAATGATGGCGGGCCTATCATGCCCAAGAAACTGCATTCTGAATTTAGTACCATGCAGTTTGGTCCTACTAATGTTCTCTGGAATAGTAATGGTAACACAGGAATGCAATTGAATTCGCCAGGCTCCAATAAATACGTGGACAATCATAAAGGCGTGACCTTTGCTAAAGAATCTTGTGCCAAAACAAATTCTGAATTTGGTATTGCTCAGTTAATGGAATATCCAAGCGGCATCCTGAGAGCTGTTGGTGGCAGTGATAGCTGTATTTCAGCTGTTAATGGAAAGATCTATGAATCACATGATGAACCAAGCTTGCCATCAGATACATTTGTGGGTGCAAAAAAAGTGTCATCTTTTGGACAAGACAATCACGTGACTTCAGGGACAGCTATTCCATTTGAAGGAATTTTGAGGGGTCTTCCCTATCTTGTTTCAAGCTCTACATTAAATCAGACCCCTACTTTGGTGCAGCAGGGCATTAATATGGATACTAATTTGCTTGATGAAAATATGAGGTTGGTTGCATTGACACAGATACAGGAGTTATCTAAGCAACAACATGCATTGCATTCTCGTGAAATGAATCAAAAGCAAGGGAGATTCAGCAATATTTCCAAAGTTCAGCACTATATACACGAGGCTTCAACATCTGAACAGGGTACTTCTGATGCATCATTGAAATTGCCCCAAAATAGAGGGACTTGTCGAAACCATGAGATTACTGATGGATTAGAGAAACTGGCTTCCCTCACAGGTTTGAACAGATACTGTTGTCTCTCTGCCTTGGTGCCAATACCTTTACATTCTCAAGAAAAGGAATCACAATGTAAACAATTCTATGATCTTCAAAGTGAAGAGCCAGCTTTGAGCCTTGGAATAAACAAAGATAATATCGGATCAAGTGCTTGTGAAAAATGCTATGAGCAACCATCAGATATACATTTGGTAGGCAAATACACTTGTGCGGCACGGGTAAACTGTTCAGGAAGCAATTTTTTCTCAGGAATTGGACCATCTCACTATACCTATAAACAACAATTTGCAAATGCTAGTGGTAAGACTTCTTTGAAGGTAGCTTCAAAGTTTAGTAGAGATCAGAATGCTTCGAAAGTTGAAAATGTCCACTTTGAGCAAGATGGGAAGTTAAATGGCCAAGACTCAGTCAAAATAGGCTCCCATACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCAGTTTCTGATGCAGCATCTTTGGATCAGACAGCTACTGTTTTGGATTGGGAAGGACAAGATGGTGTTCAAAATGGAACCATTTCTGCTAAGCGCTTCAGAAGAACTATCGATATGGAAGACTTGTTGAAAGAGCAAGAAAATTCTAATGTTTCTTCTGGATGTTCTGCTCCTGTGGTTACTCAGGCATCTGTGGAGGTCAACAAGGTTGATTCTTGTATTGTTGATGATGTAGACACTGGGTATGTCAACAACCTTGTTGTTGATGAGGGGTCAGGAATTGATAAAGGCTGGTCATCTGATATTGTTGAAAGTGAAAGAAGTGCTGAGTTTCTGGGTTCGACATGTGAGAGTTACTTGAAAAGAGGTAATCTGAGTGTCTTAAATGATCAGCCATGTTGTAATCTCCTTGATGACCTTAAATTGTTAGATTCTTTGACATGGAAGAAAGGCTGGGATCAAAATCGTACTATGCCTTCTGCTAATTTAGCCAATCAATCTCAAAAAGTCAAGAAGGGCTTTAAAGGAAAAAAGCGAAAGAGAAATGAGGTGAGGATTCTAGATGCTTCGTTGTCTTCTGGAATTCCTTCGTTATTGCATAACAAGAATGGTGAAAGTACTGAAGTTTTTAATTCCCCTTCCAATATGTCCAAAGAAATGCAACTTTGTTTTTCATCCAGCCAGCAAAGATCATCTATCAAGGCTTCTTTTGTTCAACCTAGTACCAAACAAAGACACTCAGCATTTTCATCCAAATTTCTCTCTGGTAAGAATCATCTGAGCAAGCATCGCAACGAGAAAGATAGCTATGAGTCTGAATCAAATTCTGATGCTGAGTTTCACACATTGCCTGAAATTTCTGGAATAAAGAAATTAAGAAAGGATTTCACTTCTGATTGTTCTGGGCATTTTCAAATGCAAGAAACAGACTATGAGGAACCTGAAAATGCTAAGCTGAGGCCATTCTCTAGCAGGATGGAAAATGCTCATAGAATCATAAGGCCAGTAGTATGCGGAAAATATGGTGAAATATCTAGTGGAAAATTGTCTATAGAAGTGCCAAAGCCTGCAAAAATTGTCTCTCTCTGCAAGGTTCTCAAAGCTGCCAAAAGATGTATGGTCCCTACTAATGGAAAACCTAGGGTGACTTCAAAAAAGAAATGGAAGAGATTGAACTTTGGAACAAGTAGTGGGCACTGCAGTGGCAAATCTGGTAAAACTATGGAAGACAATGAAACCGTAAATACAATAATTTGTAATGAAACAAATGTTGATATGTCTATGGAACATTTGGAGATGGGCAGCAAGCCACTTGTTATCTGCGAAGGGAAGAAAGATACTAAATCTAAGGTATGTGATAGTATTGTAAATCGAGCCAATGCTCCATTGAAGGTGAAGAGCAAGGAAATTCGGAAACAGCGTAGCATTTATGAACTCACTGTTAAAGAAACCAAAATGAAGGATATTTTGAAGTATGCTGAAGATAGGGAGCATGGTTTGTGCAACTCAAAAAGTAGAAACTATGTTCAAGAACACATGAGCATCTCCATCATAAATTCAGATGCTTTCTGCTGTGTGTGTCGAAGCTCGAGCAATGATAAAATTAACTGTTTGTTGGAGTGTGGTCGATGTCTAATTAGAGTGCATCAGGCTTGCTATGGTATTTCCACATTACCTAAAAAAGGCCATTGGTGTTGCAGACCATGCCGAACAAACTCAAAAGATATTGCTTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCGATACTGAGTCGCACCATTGTAAAAAGCCTCCTAAAAGCTTGGAATATTGAAAAAGATGGCATGCCTGGGCATACAAATTCACATGAGGTTTATGAAAAGGAAGTAGATGCATTTCATTCCTCAAAATCTGGACTTGAAGCTGACCAAAGATGTGTTTTAAGGCTTGAAAATGTTGATAAATCAACAACAGATCTGTTGAAAGTTGAGATGCCTACAAATCACATACAACACACTCTGTACTCTGGTACTTATTTTAAGGTACATAACAGCGTTACAGCCGGAGTTTTTGATACAACTGTTAAGCAGTGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCCAATGTTGACACCATGAATGCTTTTGATGTATCTGGTGTTTCATGTCCAAGAGCAGACGTGGTTTGTTCCATTTGCAATCGATCAGGCGGTTCTTGTATAGAGTGCAGGATTGTTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAAGGAATATACTCGGTACAAACAAGCAAAGGGTTGGAGACACCTTGTTGTATACAAATCCGGGATACATGCCCTTGGTCTTTACACTTCTCGGTTCATTTCCCAGGGTGAAATGGTTGTTGAGTATGTTGGAGAAATTGTAGGGCTACGTGTGGCTGATAAAAGAGAAAACGAATATCAATCTGGAAGGAAACTTCAATACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAACATATTATTGACGCCACAAGGAAAGGGGGGATTGCTCGTTTTGTTAATCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAGAAGAAGGTTGTCTTCTTCGCAGAGAGGGACATATTTCCTGGTGAAGAGATAACATATGATTACCACTTTAACCACGAAGATGAAGGAAAGAAGATTCCATGTTATTGTAATTCAAAAAATTGCAGGCGCTATTTGAACTGA 5829 0.4095 MESSWQMKCDSPFQQSASVAVSSAPLQEPRGQMEMNAGHCLYPRVSHGLRSKFVGGMQDPVCPSFLYSTNQGSVHNNAGNSFLPLLNGPPSLLQGGSNGLSDRKLCTSSGNCTAASGNSIVDSIESGNFLTSSGGLITENLVIHNLQSWADTFPDNSYREMVGPSSGSNFVFHDIQSSNTAAQPTVPGGEKAKEPFSSMGQCYSTSLASSLNVCRSDIQTTSNMALEQCSSKHATPFMSGCPRVFCMGKSGHLLLSNTGLLGIVCSCHCCHMSVLKFCEHSGLHGVNPGDAVRMESGETIAQWQKLYFLKFGIRSRGNESEWDWPDVLSATGSLLKSNSSASDMSKSDLSHILSSSAVILRSGKSSDCVMFPKNTDHNLFTGPSSRKQPTTIQDGCNIPFKGCTGISQSNLYDRVKSQLMESNLAMYTTSPNFVGTQLDDGCQPMPPFLDSLKRNGNLSIAHSPSQTPTSLLKDLECIKKKNAKDGLVGRDAASSNIELRLGQPPQTGNPVPSFIEPPEFTALASPPKLQPLKQMINNLSSEEELQNSFSYAAGSFKMVEEQPQLKPRNYMSGVSNASGAARARSETVNVAKGLSFSPFPQFTPPPKGKTKASENLVNDGGPIMPKKLHSEFSTMQFGPTNVLWNSNGNTGMQLNSPGSNKYVDNHKGVTFAKESCAKTNSEFGIAQLMEYPSGILRAVGGSDSCISAVNGKIYESHDEPSLPSDTFVGAKKVSSFGQDNHVTSGTAIPFEGILRGLPYLVSSSTLNQTPTLVQQGINMDTNLLDENMRLVALTQIQELSKQQHALHSREMNQKQGRFSNISKVQHYIHEASTSEQGTSDASLKLPQNRGTCRNHEITDGLEKLASLTGLNRYCCLSALVPIPLHSQEKESQCKQFYDLQSEEPALSLGINKDNIGSSACEKCYEQPSDIHLVGKYTCAARVNCSGSNFFSGIGPSHYTYKQQFANASGKTSLKVASKFSRDQNASKVENVHFEQDGKLNGQDSVKIGSHTPQWRDVPSKVRKAVSDAASLDQTATVLDWEGQDGVQNGTISAKRFRRTIDMEDLLKEQENSNVSSGCSAPVVTQASVEVNKVDSCIVDDVDTGYVNNLVVDEGSGIDKGWSSDIVESERSAEFLGSTCESYLKRGNLSVLNDQPCCNLLDDLKLLDSLTWKKGWDQNRTMPSANLANQSQKVKKGFKGKKRKRNEVRILDASLSSGIPSLLHNKNGESTEVFNSPSNMSKEMQLCFSSSQQRSSIKASFVQPSTKQRHSAFSSKFLSGKNHLSKHRNEKDSYESESNSDAEFHTLPEISGIKKLRKDFTSDCSGHFQMQETDYEEPENAKLRPFSSRMENAHRIIRPVVCGKYGEISSGKLSIEVPKPAKIVSLCKVLKAAKRCMVPTNGKPRVTSKKKWKRLNFGTSSGHCSGKSGKTMEDNETVNTIICNETNVDMSMEHLEMGSKPLVICEGKKDTKSKVCDSIVNRANAPLKVKSKEIRKQRSIYELTVKETKMKDILKYAEDREHGLCNSKSRNYVQEHMSISIINSDAFCCVCRSSSNDKINCLLECGRCLIRVHQACYGISTLPKKGHWCCRPCRTNSKDIACVLCGYGGGAMTRAILSRTIVKSLLKAWNIEKDGMPGHTNSHEVYEKEVDAFHSSKSGLEADQRCVLRLENVDKSTTDLLKVEMPTNHIQHTLYSGTYFKVHNSVTAGVFDTTVKQWIHMVCGLWTPGTRCPNVDTMNAFDVSGVSCPRADVVCSICNRSGGSCIECRIVDCSVKFHPWCAHQKKEYTRYKQAKGWRHLVVYKSGIHALGLYTSRFISQGEMVVEYVGEIVGLRVADKRENEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKKIPCYCNSKNCRRYLN 1942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3615g00061 1942 ProSiteProfiles Post-SET domain profile. 1926 1942 IPR003616 -
Gabi3615g00061 1942 SMART PHD_3 1546 1593 IPR001965 -
Gabi3615g00061 1942 SMART PHD_3 1753 1799 IPR001965 -
Gabi3615g00061 1942 CDD ePHD 1711 1785 - -
Gabi3615g00061 1942 Pfam PHD-zinc-finger like domain 1712 1794 - -
Gabi3615g00061 1942 ProSiteProfiles Extended PHD (ePHD) domain profile. 1692 1808 IPR034732 -
Gabi3615g00061 1942 SUPERFAMILY FYVE/PHD zinc finger 1540 1597 IPR011011 -
Gabi3615g00061 1942 Pfam Tify domain binding domain 260 306 IPR032308 -
Gabi3615g00061 1942 CDD SET_SETD1-like 1789 1938 - -
Gabi3615g00061 1942 Gene3D SET domain 1729 1942 IPR046341 -
Gabi3615g00061 1942 SMART PostSET_3 1926 1942 IPR003616 -
Gabi3615g00061 1942 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 26 389 - -
Gabi3615g00061 1942 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1531 1608 IPR013083 -
Gabi3615g00061 1942 MobiDBLite consensus disorder prediction 1271 1300 - -
Gabi3615g00061 1942 ProSiteProfiles Zinc finger PHD-type profile. 1544 1595 IPR019787 -
Gabi3615g00061 1942 MobiDBLite consensus disorder prediction 1282 1298 - -
Gabi3615g00061 1942 Pfam PHD-finger 1559 1593 - -
Gabi3615g00061 1942 ProSiteProfiles SET domain profile. 1797 1918 IPR001214 GO:0005515
Gabi3615g00061 1942 Pfam SET domain 1810 1917 IPR001214 GO:0005515
Gabi3615g00061 1942 SUPERFAMILY SET domain 1753 1938 IPR046341 -
Gabi3615g00061 1942 SMART set_7 1797 1924 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3615g00061 Gabi-Chr3615 542867 565741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3615g00061 1799 1942 C2H2 Transcription Factor Family AT2G23740 32.515 5.10e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3615g00061 SET 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3615g00061 - - ccaj:109815338 2367.04