Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3615g00059 ATGGAGAGCTCGTGGCAGATGAAATGTGATTCGCCATTTCAGCAATCGGCATCTGTGGCGGTTTCGTCTGCACCGTTGCAGGAGCCTAGGGGTCAGATGGAGATGAATGCTGGCCATTGTCTTTATCCACGAGTTTCTCATGGTTTAAGATCAAAATTTGTTGGAGGGATGCAAGACCCTGTTTGCCCCAGCTTTCTTTATTCAACCAATCAAGGATCAGTCCATAACAATGCTGGAAATTCATTTCTTCCTCTCCTTAATGGTCCTCCATCGTTGTTACAGGGTGGTTCCAATGGGTTGTCCGATCGAAAGCTTTGCACCTCATCTGGTAATTGTACTGCTGCTAGTGGGAATTCTATTGTTGATTCTATAGAAAGTGGAAACTTCCTAACATCCAGTGGGGGGCTGATAACAGAAAATTTAGTGATTCATAACCTGCAAAGCTGGGCAGATACTTTTCCTGATAATTCTTACAGGGAAATGGTTGGTCCGAGTAGTGGTAGTAATTTTGTATTTCATGATATTCAGAGTAGTAATACTGCTGCCCAGCCCACAGTTCCTGGTGGCGAGAAGGCAAAGGAGCCTTTTTCTTCTATGGGGCAATGCTATAGTACAAGCCTTGCATCTAGTCTAAATGTTTGCCGCTCAGATATTCAAACTACATCAAATATGGCTTTGGAACAGTGCTCGTCTAAGCATGCAACTCCTTTTATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGGAAAAGTGGTCATCTTCTTCTCAGCAATACAGGGCTTCTTGGTATTGTTTGCTCATGCCATTGTTGCCACATGTCCGTCCTCAAGTTTTGTGAGCATTCAGGGTTACATGGTGTCAACCCAGGGGATGCGGTTCGTATGGAAAGTGGTGAGACCATTGCGCAATGGCAGAAGTTATACTTCTTGAAGTTTGGGATTAGGTCTCGGGGAAATGAGAGTGAATGGGACTGGCCCGACGTATTATCAGCAACAGGCAGTCTGCTGAAATCCAACTCATCTGCATCTGATATGTCCAAGAGTGATTTGTCTCATATTTTGAGTTCATCTGCTGTTATATTAAGGTCTGGAAAGTCTTCTGACTGTGTTATGTTTCCGAAGAATACAGACCACAATTTATTTACTGGTCCATCATCCAGAAAACAACCGACAACAATCCAAGATGGTTGCAACATTCCGTTCAAAGGTTGTACTGGTATTTCACAAAGCAACTTGTATGACCGGGTGAAAAGCCAATTAATGGAATCTAATCTGGCTATGTACACAACTTCACCAAACTTTGTTGGAACTCAACTGGATGATGGTTGCCAGCCTATGCCCCCTTTCCTTGATTCTCTTAAAAGGAATGGAAATTTGTCAATTGCCCACTCTCCTTCACAAACTCCAACAAGCCTTCTGAAAGACCTTGAATGCATAAAAAAGAAGAATGCCAAGGATGGTCTTGTAGGCAGAGATGCAGCTTCCTCTAATATTGAGCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCCAGTTCCATCATTTATAGAACCACCAGAGTTTACTGCCCTTGCCAGTCCTCCGAAATTGCAACCTCTGAAGCAGATGATTAATAACCTCAGCAGCGAGGAGGAATTGCAGAATAGTTTTAGCTATGCTGCTGGTTCATTCAAAATGGTCGAAGAGCAACCTCAGCTTAAACCCAGGAACTATATGTCTGGTGTTAGTAATGCTTCTGGTGCTGCTAGAGCTAGATCAGAAACTGTCAATGTGGCCAAGGGTTTATCATTTTCACCATTTCCACAGTTTACTCCTCCACCCAAGGGAAAGACAAAAGCAAGTGAAAATTTGGTGAATGATGGCGGGCCTATCATGCCCAAGAAACTGCATTCTGAATTTAGTACCATGCAGTTTGGTCCTACTAATGTTCTCTGGAATAGTAATGGTAACACAGGAATGCAATTGAATTCGCCAGGCTCCAATAAATACGTGGACAATCATAAAGGCGTGACCTTTGCTAAAGAATCTTGTGCCAAAACAAATTCTGAATTTGGTATTGCTCAGTTAATGGAATATCCAAGCGGCATCCTGAGAGCTGTTGGTGGCAGTGATAGCTGTATTTCAGCTGTTAATGGAAAGATCTATGAATCACATGATGAACCAAGCTTGCCATCAGATACATTTGTGGGTGCAAAAAAAGTGTCATCTTTTGGACAAGACAATCACGTGACTTCAGGGACAGCTATTCCATTTGAAGGAATTTTGAGGGGTCTTCCCTATCTTGTTTCAAGCTCTACATTAAATCAGACCCCTACTTTGGTGCAGCAGGGCATTAATATGGATACTAATTTGCTTGATGAAAATATGAGGTTGGTTGCATTGACACAGATACAGGAGTTATCTAAGCAACAACATGCATTGCATTCTCGTGAAATGAATCAAAAGCAAGGGAGATTCAGCAATATTTCCAAAGTTCAGCACTATATACACGAGGCTTCAACATCTGAACAGGGTACTTCTGATGCATCATTGAAATTGCCCCAAAATAGAGGGACTTGTCGAAACCATGAGATTACTGATGGATTAGAGAAACTGGCTTCCCTCACAGGTTTGAACAGATACTGTTGTCTCTCTGCCTTGGTGCCAATACCTTTACATTCTCAAGAAAAGGAATCACAATGTAAACAATTCTATGATCTTCAAAGTGAAGAGCCAGCTTTGAGCCTTGGAATAAACAAAGATAATATCGGATCAAGTGCTTGTGAAAAATGCTATGAGCAACCATCAGATATACATTTGGTAGGCAAATACACTTGTGCGGCACGGGTAAACTGTTCAGGAAGCAATTTTTTCTCAGGAATTGGACCATCTCACTATACCTATAAACAACAATTTGCAAATGCTAGTGGTAAGACTTCTTTGAAGGTAGCTTCAAAGTTTAGTAGAGATCAGAATGCTTCGAAAGTTGAAAATGTCCACTTTGAGCAAGATGGGAAGTTAAATGGCCAAGACTCAGTCAAAATAGGCTCCCATACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCAGTTTCTGATGCAGCATCTTTGGATCAGACAGCTACTGTTTTGGATTGGGAAGGACAAGATGGTGTTCAAAATGGAACCATTTCTGCTAAGCGCTTCAGAAGAACTATCGATATGGAAGACTTGTTGAAAGAGCAAGAAAATTCTAATGTTTCTTCTGGATGTTCTGCTCCTGTGGTTACTCAGGCATCTGTGGAGGTCAACAAGGTTGATTCTTGTATTGTTGATGATGTAGACACTGGGTATGTCAACAACCTTGTTGTTGATGAGGGGTCAGGAATTGATAAAGGCTGGTCATCTGATATTGTTGAAAGTGAAAGAAGTGCTGAGTTTCTGGGTTCGACATGTGAGAGTTACTTGAAAAGAGGTAATCTGAGTGTCTTAAATGATCAGCCATGTTGTAATCTCCTTGATGACCTTAAATTGTTAGATTCTTTGACATGGAAGAAAGGCTGGGATCAAAATCGTACTATGCCTTCTGCTAATTTAGCCAATCAATCTCAAAAAGTCAAGAAGGGCTTTAAAGGAAAAAAGCGAAAGAGAAATGAGGTGAGGATTCTAGATGCTTCGTTGTCTTCTGGAATTCCTTCGTTATTGCATAACAAGAATGGTGAAAGTACTGAAGTTTTTAATTCCCCTTCCAATATGTCCAAAGAAATGCAACTTTGTTTTTCATCCAGCCAGCAAAGATCATCTATCAAGGCTTCTTTTGTTCAACCTAGTACCAAACAAAGACACTCAGCATTTTCATCCAAATTTCTCTCTGGTAAGAATCATCTGAGCAAGCATCGCAACGAGAAAGATAGCTATGAGTCTGAATCAAATTCTGATGCTGAGTTTCACACATTGCCTGAAATTTCTGGAATAAAGAAATTAAGAAAGGATTTCACTTCTGATTGTTCTGGGCATTTTCAAATGCAAGAAACAGACTATGAGGAACCTGAAAATGCTAAGCTGAGGCCATTCTCTAGCAGGATGGAAAATGCTCATAGAATCATAAGGCCAGTAGTATGCGGAAAATATGGTGAAATATCTAGTGGAAAATTGTCTATAGAAGTGCCAAAGCCTGCAAAAATTGTCTCTCTCTGCAAGGTTCTCAAAGCTGCCAAAAGATGTATGGTCCCTACTAATGGAAAACCTAGGGTGACTTCAAAAAAGAAATGGAAGAGATTGAACTTTGGAACAAGTAGTGGGCACTGCAGTGGCAAATCTGGTAAAACTATGGAAGACAATGAAACCGTAAATACAATAATTTGTAATGAAACAAATGTTGATATGTCTATGGAACATTTGGAGATGGGCAGCAAGCCACTTGTTATCTGCGAAGGGAAGAAAGATACTAAATCTAAGGTATGTGATAGTATTGTAAATCGAGCCAATGCTCCATTGAAGGTGAAGAGCAAGGAAATTCGGAAACAGCGTAGCATTTATGAACTCACTGTTAAAGAAACCAAAATGAAGGATATTTTGAAGTATGCTGAAGATAGGGAGCATGGTTTGTGCAACTCAAAAAGTAGAAACTATGTTCAAGAACACATGAGCATCTCCATCATAAATTCAGATGCTTTCTGCTGTGTGTGTCGAAGCTCGAGCAATGATAAAATTAACTGTTTGTTGGAGTGTGGTCGATGTCTAATTAGAGTGCATCAGGCTTGCTATGGTATTTCCACATTACCTAAAAAAGGCCATTGGTGTTGCAGACCATGCCGAACAAACTCAAAAGATATTGCTTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCGATACTGAGTCGCACCATTGTAAAAAGCCTCCTAAAAGCTTGGAATATTGAAAAAGATGGCATGCCTGGGCATACAAATTCACATGAGGTTTATGAAAAGGAAGTAGATGCATTTCATTCCTCAAAATCTGGACTTGAAGCTGACCAAAGATGTGTTTTAAGGCTTGAAAATGTTGATAAATCAACAACAGATCTGTTGAAAGTTGAGATGCCTACAAATCACATACAACACACTCTGTACTCTGGTACTTATTTTAAGGTACATAACAGCGTTACAGCCGGAGTTTTTGATACAACTGTTAAGCAGTGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCCAATGTTGACACCATGAATGCTTTTGATGTATCTGGTGTTTCATGTCCAAGAGCAGACGTGGTTTGTTCCATTTGCAATCGATCAGGCGGTTCTTGTATAGAGTGCAGGATTGTTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAACCTGTTGCAAAGTGAGACTGAGGGTGTTGATGATGAGAAGGTTGGATTTTATGGAAGATGTGTGCTTCATGCTATTGACCCTCAATGTCAGTCCACATGTGATCCTAATGACGAGAAGGGCAACAGTCCAGAAGAAAAGGAATTCACCTGTGCCAGGACACAGGGTTACAAGGGTCGGAGATGGGATGGTTTTCAGAATAATCGTTACAGTGCCTTGAAAGACAAGGGTGGATGCCTTGTTCCTGAGGAGCAGTTAAATGCTTGGATTCACATTAATGGGCAGAAAATGTGTTCGCAGGGACTCCCAAAATTTCCTGATTTAGAGATTGAGCATGATTGTCGGAAGGAATATACTCGGTACAAACAAGCAAAGGGTTGGAGACACCTTGTTGTATACAAATCCGGGATACATGCCCTTGGTCTTTACACTTCTCGGTTCATTTCCCAGGGTGAAATGGTTGTTGAGTATGTTGGAGAAATTGTAGGGCTACGTGTGGCTGATAAAAGAGAAAACGAATATCAATCTGGAAGGAAACTTCAATACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAACATATTATTGACGCCACAAGGAAAGGGGGGATTGCTCGTTTTGTTAATCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAGAAGAAGGTTGTCTTCTTCGCAGAGAGGGACATATTTCCTGGTGAAGAGATAACATATGATTACCACTTTAACCACGAAGATGAAGGAAAGAAGATTCCATGTTATTGTAATTCAAAAAATTGCAGGCGCTATTTGAACTGA 6174 0.4117 MESSWQMKCDSPFQQSASVAVSSAPLQEPRGQMEMNAGHCLYPRVSHGLRSKFVGGMQDPVCPSFLYSTNQGSVHNNAGNSFLPLLNGPPSLLQGGSNGLSDRKLCTSSGNCTAASGNSIVDSIESGNFLTSSGGLITENLVIHNLQSWADTFPDNSYREMVGPSSGSNFVFHDIQSSNTAAQPTVPGGEKAKEPFSSMGQCYSTSLASSLNVCRSDIQTTSNMALEQCSSKHATPFMSGCPRVFCMGKSGHLLLSNTGLLGIVCSCHCCHMSVLKFCEHSGLHGVNPGDAVRMESGETIAQWQKLYFLKFGIRSRGNESEWDWPDVLSATGSLLKSNSSASDMSKSDLSHILSSSAVILRSGKSSDCVMFPKNTDHNLFTGPSSRKQPTTIQDGCNIPFKGCTGISQSNLYDRVKSQLMESNLAMYTTSPNFVGTQLDDGCQPMPPFLDSLKRNGNLSIAHSPSQTPTSLLKDLECIKKKNAKDGLVGRDAASSNIELRLGQPPQTGNPVPSFIEPPEFTALASPPKLQPLKQMINNLSSEEELQNSFSYAAGSFKMVEEQPQLKPRNYMSGVSNASGAARARSETVNVAKGLSFSPFPQFTPPPKGKTKASENLVNDGGPIMPKKLHSEFSTMQFGPTNVLWNSNGNTGMQLNSPGSNKYVDNHKGVTFAKESCAKTNSEFGIAQLMEYPSGILRAVGGSDSCISAVNGKIYESHDEPSLPSDTFVGAKKVSSFGQDNHVTSGTAIPFEGILRGLPYLVSSSTLNQTPTLVQQGINMDTNLLDENMRLVALTQIQELSKQQHALHSREMNQKQGRFSNISKVQHYIHEASTSEQGTSDASLKLPQNRGTCRNHEITDGLEKLASLTGLNRYCCLSALVPIPLHSQEKESQCKQFYDLQSEEPALSLGINKDNIGSSACEKCYEQPSDIHLVGKYTCAARVNCSGSNFFSGIGPSHYTYKQQFANASGKTSLKVASKFSRDQNASKVENVHFEQDGKLNGQDSVKIGSHTPQWRDVPSKVRKAVSDAASLDQTATVLDWEGQDGVQNGTISAKRFRRTIDMEDLLKEQENSNVSSGCSAPVVTQASVEVNKVDSCIVDDVDTGYVNNLVVDEGSGIDKGWSSDIVESERSAEFLGSTCESYLKRGNLSVLNDQPCCNLLDDLKLLDSLTWKKGWDQNRTMPSANLANQSQKVKKGFKGKKRKRNEVRILDASLSSGIPSLLHNKNGESTEVFNSPSNMSKEMQLCFSSSQQRSSIKASFVQPSTKQRHSAFSSKFLSGKNHLSKHRNEKDSYESESNSDAEFHTLPEISGIKKLRKDFTSDCSGHFQMQETDYEEPENAKLRPFSSRMENAHRIIRPVVCGKYGEISSGKLSIEVPKPAKIVSLCKVLKAAKRCMVPTNGKPRVTSKKKWKRLNFGTSSGHCSGKSGKTMEDNETVNTIICNETNVDMSMEHLEMGSKPLVICEGKKDTKSKVCDSIVNRANAPLKVKSKEIRKQRSIYELTVKETKMKDILKYAEDREHGLCNSKSRNYVQEHMSISIINSDAFCCVCRSSSNDKINCLLECGRCLIRVHQACYGISTLPKKGHWCCRPCRTNSKDIACVLCGYGGGAMTRAILSRTIVKSLLKAWNIEKDGMPGHTNSHEVYEKEVDAFHSSKSGLEADQRCVLRLENVDKSTTDLLKVEMPTNHIQHTLYSGTYFKVHNSVTAGVFDTTVKQWIHMVCGLWTPGTRCPNVDTMNAFDVSGVSCPRADVVCSICNRSGGSCIECRIVDCSVKFHPWCAHQKNLLQSETEGVDDEKVGFYGRCVLHAIDPQCQSTCDPNDEKGNSPEEKEFTCARTQGYKGRRWDGFQNNRYSALKDKGGCLVPEEQLNAWIHINGQKMCSQGLPKFPDLEIEHDCRKEYTRYKQAKGWRHLVVYKSGIHALGLYTSRFISQGEMVVEYVGEIVGLRVADKRENEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKKIPCYCNSKNCRRYLN 2057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3615g00059 2057 ProSiteProfiles Extended PHD (ePHD) domain profile. 1692 1809 IPR034732 -
Gabi3615g00059 2057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1531 1607 IPR013083 -
Gabi3615g00059 2057 MobiDBLite consensus disorder prediction 1271 1300 - -
Gabi3615g00059 2057 CDD SET_SETD1-like 1914 2053 - -
Gabi3615g00059 2057 ProSiteProfiles Zinc finger PHD-type profile. 1544 1595 IPR019787 -
Gabi3615g00059 2057 CDD ePHD 1711 1799 - -
Gabi3615g00059 2057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1699 1809 IPR013083 -
Gabi3615g00059 2057 Pfam SET domain 1925 2032 IPR001214 GO:0005515
Gabi3615g00059 2057 Pfam PHD-zinc-finger like domain 1712 1792 - -
Gabi3615g00059 2057 SUPERFAMILY SET domain 1904 2057 IPR046341 -
Gabi3615g00059 2057 Pfam PHD-finger 1559 1593 - -
Gabi3615g00059 2057 SUPERFAMILY FYVE/PHD zinc finger 1540 1597 IPR011011 -
Gabi3615g00059 2057 Gene3D SET domain 1840 2057 IPR046341 -
Gabi3615g00059 2057 Pfam Tify domain binding domain 260 306 IPR032308 -
Gabi3615g00059 2057 SMART PHD_3 1546 1593 IPR001965 -
Gabi3615g00059 2057 SMART PHD_3 1753 1809 IPR001965 -
Gabi3615g00059 2057 ProSiteProfiles SET domain profile. 1912 2033 IPR001214 GO:0005515
Gabi3615g00059 2057 FunFam Histone-lysine N-methyltransferase 1821 2057 - -
Gabi3615g00059 2057 SMART set_7 1912 2039 IPR001214 GO:0005515
Gabi3615g00059 2057 MobiDBLite consensus disorder prediction 1282 1298 - -
Gabi3615g00059 2057 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 588 2057 - -
Gabi3615g00059 2057 ProSiteProfiles Post-SET domain profile. 2041 2057 IPR003616 -
Gabi3615g00059 2057 SMART PostSET_3 2041 2057 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3615g00059 Gabi-Chr3615 542867 565741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3615g00059 1914 2057 C2H2 Transcription Factor Family AT2G23740 32.515 5.61e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3615g00059 SET 1.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3615g00059 - - ccaj:109815338 2856.63