Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3615g00054 ATGGGGAAGCCCACGGGAAAAAAGAAGGATCCCGAAACTCCACGGGCGAACGGTAACAACAACAACAACAACAACAACAACAAGGCATTCGAGCGTGGTTCGTCGTCGAAAGCTTTCGACGAAGACACAGCGATGTTCATCAACATGTCACACGAGCTGAAAGAGGAAGGTAACAGGCTTTTTCAGAAGAAGGACCACGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTCAAGCTCCTTCCCAAGAACCACATCGACGTTGCACACCTTCACACCAACATGGCCGTTTGTTACATGCAATTAGGGCTCGGCGAGTACCCTCGAGCCATCAACGAGTGCAACTTGGCTTTGCAAGTTTCCCCTCGTTATAGCAAGGCTCTCTTGAAGAGAGCCAAGTGCTACGAATCCTTGAATCGTTTGGATTTAGCTATGAGGGACGTTCGTGTTGTTCTTAACTCTGAACCCAACAATCTCACCGCTTTGGAGATTCTCGATAGTTTGAGAAGGACCATGGATGAGAAAGGGATCGTTGTGGATGAAACTGAGATTGCTTTGGCTACTATAGTTCAGCAGCAGCAGCAGCAGCAGCAGGAGCCTCCCGGTGCGCGGTTGCGAAAAGTGGTGAGGGAGAAGATGAGGAAGAAGAAGAAAGTTAATAGTAATGGTGGGGCTGAAGATAAGGGCAAGGTGGTTGTTGAGGAGAAGAAGGTGAATAATGGTGATGTTAAGGATAAGGGATTGGTGAAGAAAGAAGAGAAATTGGTAGTGAAACCTGTTAAGCAAGAAAAAGAGAAGGCTTTGACCAGGACGGTGAAGTTGATATATGGAGAGGATATAAGGTGGGCGCAGTTGCCTTTGAATTGTAGTATGAGGTTGGTGAGGGATGTGATAAGGGATCGGTTTCCGGGGTTAAAGGGTGTTCTTGTTAAGTATAGGGATCGAGAAGGTGATTTGGTTACTATAACTACTACTGCTGAACTGAGGTTGGCTGAAACTTGTCACGTGCTTGGCTCAATTCGGCTCTATGTTACACAAGTTAATCCGGATCAGGAGCCGGATTATGATGAGACAACGACAACCGGTGATGGCGAGGCACGAAGAGATGGCAGAAAACCGGCTGCTGGTGGTGGTGATGATGTCGAGAATGGGGCTGCTGCGGAAGGAGGCAGAGGTGCGGCTAACAGGATGACTACTGTGGAGGACTGGCTTGTCCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCGGATTCATATCTAGATATTCATGAGGTTGGAATGAAGCTGTATTCGGCAGCAATGGAGGATGCAGTGACAGGTGATGCTGCACAAGAACTGTTTGAAATTGCTGCCGATAAGTTTCAAGAGATGGCAGCTTTGGCATTGTTTAATTGGGGAAGTGTTCACATGTCCAGGGCTAGGAAGCGGGTGTCCTTTCCAGAGGATGGGTCGAGAGAATCTTCTTTTGAGCATGTTAAGGCTGCATATGAGTGGGCTCAAAAGGAGTACATGAATGCAGAAATGAGATATGAAGAATCTGTGAGGATCAAACCCGACTTTTATGAAGGACTTCTGGCTCTTGGTTATCAGCAGTTTGAACAAGCAAAGCTCTGCTGGTGTTATTTAACTGCAAACAAGAAGGATTTAGAAATTGGCCATTCAGATGAGGTTCTACAGCTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAAATCGAGGAGCAACGTTTGAATGGATTATCCAAATTAGATAAATATAAAGCTCAGTTAGAGAAAATGGGTTTGCATGGTCTTTTCAGGGATGTTTCTTCTGATGAAGCTGAAGAGCAGGCTGCAAAGATGAGGTTACAAATATATCTTTTATGGGGCACCTTATTGTATGAGCGTTCTGTTGTGGAATATAAGCTAGGCCTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCTTCAACTGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAGACAGCAATGGAAGGTAAAGGATGGGAAAATATGATCCATCGGTTCAAAATTGATGAGATAGTGCAAGCGTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTATTCCAAAACTCCATTACATCTTGGAGCAATTTTAA 2220 0.4523 MGKPTGKKKDPETPRANGNNNNNNNNNKAFERGSSSKAFDEDTAMFINMSHELKEEGNRLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMAVCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYESLNRLDLAMRDVRVVLNSEPNNLTALEILDSLRRTMDEKGIVVDETEIALATIVQQQQQQQQEPPGARLRKVVREKMRKKKKVNSNGGAEDKGKVVVEEKKVNNGDVKDKGLVKKEEKLVVKPVKQEKEKALTRTVKLIYGEDIRWAQLPLNCSMRLVRDVIRDRFPGLKGVLVKYRDREGDLVTITTTAELRLAETCHVLGSIRLYVTQVNPDQEPDYDETTTTGDGEARRDGRKPAAGGGDDVENGAAAEGGRGAANRMTTVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSAAMEDAVTGDAAQELFEIAADKFQEMAALALFNWGSVHMSRARKRVSFPEDGSRESSFEHVKAAYEWAQKEYMNAEMRYEESVRIKPDFYEGLLALGYQQFEQAKLCWCYLTANKKDLEIGHSDEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYKAQLEKMGLHGLFRDVSSDEAEEQAAKMRLQIYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSTDIGVMIKNHCSNETAMEGKGWENMIHRFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRIPKLHYILEQF 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3615g00054 739 SMART PB1_new 268 346 IPR000270 GO:0005515
Gabi3615g00054 739 SMART tpr_5 88 123 IPR019734 GO:0005515
Gabi3615g00054 739 SMART tpr_5 489 522 IPR019734 GO:0005515
Gabi3615g00054 739 SMART tpr_5 50 83 IPR019734 GO:0005515
Gabi3615g00054 739 SMART tpr_5 124 157 IPR019734 GO:0005515
Gabi3615g00054 739 MobiDBLite consensus disorder prediction 359 375 - -
Gabi3615g00054 739 Gene3D - 253 345 - -
Gabi3615g00054 739 Gene3D Tetratricopeptide repeat domain 48 176 IPR011990 GO:0005515
Gabi3615g00054 739 SUPERFAMILY TPR-like 41 170 IPR011990 GO:0005515
Gabi3615g00054 739 PANTHER PROTEIN CLMP1 1 737 IPR044517 -
Gabi3615g00054 739 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Gabi3615g00054 739 Pfam PB1 domain 268 345 IPR000270 GO:0005515
Gabi3615g00054 739 MobiDBLite consensus disorder prediction 347 391 - -
Gabi3615g00054 739 CDD PB1 270 343 - -
Gabi3615g00054 739 ProSiteProfiles PB1 domain profile. 268 346 IPR000270 GO:0005515
Gabi3615g00054 739 SUPERFAMILY CAD & PB1 domains 268 357 - -
Gabi3615g00054 739 MobiDBLite consensus disorder prediction 15 33 - -
Gabi3615g00054 739 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3615g00054 Gabi-Chr3615 486446 490985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3615g00054 38 157 Calmodulin-binding Proteins AT3G25230 31.008 7.17e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3615g00054 K26538 - qsa:O6P43_015720 991.104