Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3615g00045 ATGCACTCTTTTGTTTCTAATTATTTTTATGGACCAGAATTATGGTCTTCTTTTCTTCTCATGTGTGGTGTGATTATAGGGAATCAACTGGAGTTAGGAGCATCGTCCCAGCTTGACTTGGAAGCAAATGCTATACTCAATAGTGGATGGTGGGAATTGTACGACAATATCTCCAATCGCTGTATGTGGAATGGTATAGTTTGCAACGACGCTGGAAGCATAACAAAAATCCAATCCCGGGAATCAAAGAGAGTGGTTGAATTTGAAAAACTCAACCTCTCAGCTTTCCATAATTTAGAAAAGCTTGATCTCTTGGGAATTGGAATACGAGGGACTATCCCACCAGAAATTGGTAGTCTGTGCAAACTCACTTATCTCGATTTGTCCAACAATCAACTAATAGGTGAGATACCACCTTCACTAGGAAATCTTAGGCAGTTACATACCCTAATCCTCGCTCGCAATGACATTAATGGCTCCATTCCTCACGAGTTGGGGTTCCTCAAAAATCTTGTTACACTTGATCTATCTAATAACATGATAAGTGGGAACTTGCCTATTTCGCTTACGAATCTCACTCGACTAGAAAAGCTTGATATTTCCAGCAATCTACTAGTAGGTTCCATCCTTTCTAATTTAGATCAATTAACCAACTTGCAAGAGTTGAGGCTAAATCGTAACTCCATCAGTGGGAACATAGTACACTTGTTAGCTGAAAGCCCTGCGATGCTAACCGCTATTGACCTCAGTTACAATGACATTAGTGGCGAAATACCATCACAGATTGGATATTTTCCAAACTTAACCATTTTGGATCTAAGTTTCAATAATCTCACAGGAATGGTTCCCCGAAGTCTCATTCATGTTCATTTCGTGGTGGACATGTCCTATAATTATTTGAAGGGTCCAATTCCAGATGGCTTCAGCCCTTATGCGCTAATAGGCAACATTGATGTATGTAGCGACAATTCGCATTATCAACGGGCATTCAAATTTCAACCTTGTTCATCTTACAGCAAAACAAGCATGAAAGTAAAACAATATCTAGTCATAGTTATTCCCATCATTATTTTGCTAATCGCCGCCCTCTTACTGCTTGTGTATCTGAAACTGCGTAAAGGTGCAACAAAGAACAAACATGCAAACACAGCAGCAACTAAGAACGGGGATTTCTTCTGTATATGGAATTATGATGGAAGCATTGCATATGAAGACTTAATTAGAGCTACAGAGGACTTTGACATGAAATTTTGCATTGGAACAGGAGGGTATGGGAGTGTTTACAAGGCACAATTGCCTAGTGGCAAGGTTGTTGCCTTGAAAAAACTCCATGGTTTTGAAGCAGAGGTGCCGGCTTTTGATGAGAGTTTCAGAAATGAAGCGAGAATCTTATCAGAAATAAAGCACCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGTATCATGTTTTTGATATATGAGTACATGGAGAATGGAAGCTTGTTTTCTGTGCTGTATGATGATGTTGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTAACATTGTTAAAGGCATTGCAAATGCTCTTTCATATCTTCATCATCATTGTTCCCCTCCAATAGTACATAGAGACATAAGTAGCAGCAATGTTTTACTGAATTCAGAGTGGCAACCCCGTGTTTCTGACTTTGGCACAGCCAGACTCCTCCAACATGAGTCATCCTATCGAACTATAGTTGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCCTATACTATGGTTGTGAATGAAAAATGTGATGTCTATAGCTTTGGAATGGTGGCACTTGAAACTTTAGTGGGAAGGCATCCTAAGGAAATACTGTCATCACTTCAATCAGCATCTACTAATGCCATCACATTATGTGAAGTACTGGATCAACGCCTTCCACATCCAGATATGGCAGTTTTACTTGACGTAGTTCGTGTTACCATAATAGCATTTGCATGCTTAAATCCCAATCCTTGCTCTCGGCCAACAATGAACTACGTGTCTCAATGTTTTCCAACTCAGCCAAAACCATTAAGCATTCCTTTGGGTAAAATTTCATTGCAGCAGCTCATGAATGAAGAGTTCAAGAATTATTTATAG 2124 0.396 MHSFVSNYFYGPELWSSFLLMCGVIIGNQLELGASSQLDLEANAILNSGWWELYDNISNRCMWNGIVCNDAGSITKIQSRESKRVVEFEKLNLSAFHNLEKLDLLGIGIRGTIPPEIGSLCKLTYLDLSNNQLIGEIPPSLGNLRQLHTLILARNDINGSIPHELGFLKNLVTLDLSNNMISGNLPISLTNLTRLEKLDISSNLLVGSILSNLDQLTNLQELRLNRNSISGNIVHLLAESPAMLTAIDLSYNDISGEIPSQIGYFPNLTILDLSFNNLTGMVPRSLIHVHFVVDMSYNYLKGPIPDGFSPYALIGNIDVCSDNSHYQRAFKFQPCSSYSKTSMKVKQYLVIVIPIIILLIAALLLLVYLKLRKGATKNKHANTAATKNGDFFCIWNYDGSIAYEDLIRATEDFDMKFCIGTGGYGSVYKAQLPSGKVVALKKLHGFEAEVPAFDESFRNEARILSEIKHRHIVKLYGFCLHKSIMFLIYEYMENGSLFSVLYDDVEAMELDWRKRVNIVKGIANALSYLHHHCSPPIVHRDISSSNVLLNSEWQPRVSDFGTARLLQHESSYRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGMVALETLVGRHPKEILSSLQSASTNAITLCEVLDQRLPHPDMAVLLDVVRVTIIAFACLNPNPCSRPTMNYVSQCFPTQPKPLSIPLGKISLQQLMNEEFKNYL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3615g00045 707 FunFam Nuclear pore complex protein NUP107 34 179 - -
Gabi3615g00045 707 SMART LRR_typ_2 168 192 IPR003591 -
Gabi3615g00045 707 SMART LRR_typ_2 265 288 IPR003591 -
Gabi3615g00045 707 SMART LRR_typ_2 216 241 IPR003591 -
Gabi3615g00045 707 SMART LRR_typ_2 120 144 IPR003591 -
Gabi3615g00045 707 FunFam MDIS1-interacting receptor like kinase 2 492 685 - -
Gabi3615g00045 707 PRINTS Leucine-rich repeat signature 123 136 - -
Gabi3615g00045 707 PRINTS Leucine-rich repeat signature 168 181 - -
Gabi3615g00045 707 ProSitePatterns Protein kinases ATP-binding region signature. 419 441 IPR017441 GO:0005524
Gabi3615g00045 707 Gene3D Transferase(Phosphotransferase) domain 1 492 684 - -
Gabi3615g00045 707 Gene3D Phosphorylase Kinase; domain 1 373 491 - -
Gabi3615g00045 707 SMART LRR_sd22_2 265 291 - -
Gabi3615g00045 707 SMART LRR_sd22_2 168 189 - -
Gabi3615g00045 707 SMART LRR_sd22_2 216 235 - -
Gabi3615g00045 707 SMART LRR_sd22_2 192 215 - -
Gabi3615g00045 707 SMART LRR_sd22_2 120 146 - -
Gabi3615g00045 707 PANTHER LEUCINE RICH REPEAT KINASE 2 142 682 - -
Gabi3615g00045 707 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Gabi3615g00045 707 ProSiteProfiles Leucine-rich repeat profile. 122 145 IPR001611 GO:0005515
Gabi3615g00045 707 SUPERFAMILY Protein kinase-like (PK-like) 397 677 IPR011009 -
Gabi3615g00045 707 FunFam Leucine-rich repeat protein kinase family protein 377 491 - -
Gabi3615g00045 707 ProSiteProfiles Leucine-rich repeat profile. 170 193 IPR001611 GO:0005515
Gabi3615g00045 707 Gene3D Ribonuclease Inhibitor 34 326 IPR032675 -
Gabi3615g00045 707 ProSiteProfiles Protein kinase domain profile. 413 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3615g00045 707 Pfam Leucine Rich repeat 266 280 IPR001611 GO:0005515
Gabi3615g00045 707 Pfam Leucine Rich repeat 243 257 IPR001611 GO:0005515
Gabi3615g00045 707 ProSitePatterns Tyrosine protein kinases specific active-site signature. 537 549 IPR008266 GO:0004672|GO:0006468
Gabi3615g00045 707 Pfam Protein kinase domain 418 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3615g00045 707 SUPERFAMILY L domain-like 48 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3615g00045 Gabi-Chr3615 362872 365825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3615g00045 109 585 Receptor kinase-like Gene Family AT4G08850 42.857 1.31e-113 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3615g00045 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3615g00045 - - aprc:113862530 797.734