Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3615g00030 ATGGGAAAACATGGGTCTCTCTTCCATGTAATGGATACCCTCTGCTTGTGTATCCTCCTTTCATCTGAAGTGGTTTTGGCTAGTATTCTAAAAGTTGGCAAGGTCTCTCCCGGATTTGAAGGCTCTCAAATGAATTGGATTGACAGGGATGGAAAGTTCCTTGTGTCAAACAAAGGAGATTTTGGCTTTGGCTTTGTCACCACAGCAAATGACACCACATTGTTTCTACTAGCAGTGGTTCACATGGACAGTACCAAGGTGGTTTGGGTTGCAAATAGAGCACTTCCTGTTTCCAATTCTGATAAATTTGTGTTTGATGAGAAAGGTAATGTCTTTTTGCAGAAAGGAGGAACTGTTGTCTGGTCTACAGATACAAGTGGCAAGGGAGTTTCTTCAATGGAATTACAAGACACTGGAAATTTGGTTTTGCTTGGGAAAGATAATAGAGTGATTTGGCAGAGTTTCAGCCATCCAACGGATACCTTGTTGCCTATGCAGGACTTCACTGAGGGAATGGAACTAATCAGTGAACCTGGTTCTAACAACTTGACCTATGTTCTTAAGATTGAATCTGGCAATGTTATTCTTTATGCAGGTTTTCAAACTCCACAGCCTTATTGGTCATTGCAGAAGGATAGCCGCATAATCGTCAATAACAATGGTGATGTGGTAGCTTCAGCAACCCTTAGTGCAAATTCATGGAGGTTCTATGATAAAAACAAATCCTTGTTGTGGCAATTTATTTTCGCTGAAGATTCAGCTGCTAATGCAAATGCTACTTGGATTGCAGTTTTAGGAAGTGATGGCATTATCACTTTCTCCAATCTCCAAAGTGCAAGGTCAATTGTTGCCTCGCCAACAAGAATACCCCAAGATTCTTGCAGTACACCAGAACCTTGTGATCCTTATAACATATGCACCGGTGACAAAAAGTGTAGTTGCCCTTCTGTTCTTAGCTCTAGTCCTAATTGCAAACCAGGGTTTCTCTCCCCTTGCAACTCCAAAAATTCCATTGAGCTCTTGAAAGCTGATGATAGACTCAATTACTTTGCGCTTGAGTTTCTTCCACCCTCTTCAAAAACCGATTTGATTGGTTGCAAAACTTCATGCAGTGAAAACTGCTCATGCCTTGCTATGTTCTTCCAAAGCAGTTCAGGGAACTGTTTCCTTTTGGACAGGATTGGAAGCTTTGAGAAATCTGATAATGATTATGGTTTTGTCTCTTACATTAAGGTCTCTAGTGATGGAGGAGCTGGTACGGGCATAGGGAAAAGTGGAAGCAGCAATATTCAGACAATAGTTGTTGTGATCATAGTTATAATAACATTGCTTGTGATTTCTGGTATGCTCTTTGTGGGACATAGGTACTTCAGGAAAAAGCAAAATTTGCCTGAGTCTCCTCCCCAAGAGAATTCAGAAGAGGACAATTTCTTGGAGAATTTAACTGGGATGCCAATCCGTTTTAGTTACAATGATCTAGAAACTGCAACCAATAACTTCTCAGTGAAGCTTGGGCATGGTGGTTTTGGCTCAGTCTATAAAGGAGTTCTACCAGATGGGACTCAACTAGCTGTGAAGAAGTTGGAAGGCATTGGCCAAGGGAAGAAAGAGTTCAGGGCTGAAGTAAGCATAATTGGTAGCATTCATCATAACCATTTGGTTAGGCTTAAAGGGTTCTGTGCTGAAGGAACTCATAGACTTCTTGCTTATGAGTACATGGCCAATGGTTCATTGGATAGATGGATATTCAATAAAAACAAAGGAGAGTTTTTGTTGGATTGGGATACTAGGTTTAATATAGCACTTGGAACAGCAAAAGGACTTGCTTACCTACACCAAGATTGTGATTCAAAGATTGTTCATTGTGATATCAAACCAGAAAATGTGCTTCTAGATGATAATTTCTCTGCCAAAGTTTCAGATTTTGGTCTGGCTAAGCTCATGACACGTGAACAAAGTCATGTTTTTACAACACTAAGGGGCACCAGGGGGTATCTTGCACCAGAGTGGATCACAAACTATGCTATATCAGAGAAAAGTGATGTTTATAGCTACGGGATGGTGTTGCTAGAGATTATTGGTGGAAGGAAAAATTATGATCCTACTAAAAGTTCAGAGAAATCCCATTTCCCAACTTTTGCTTTTAAGATGATGGAAGAAGGGAAAGTGAAAGATATTCTTGATTCAAAGTTGAAAACATATGAAAATGGTGTGGATGTGAGGGTTCACATTGCTGTCAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCTCTGAGACCTTCAATGACCAAAGTTGTTCAAATGCTAGAGGGTCTATGTACTGTTCCTAAGCCACCAACTTGTTCTCCCATGGCTTCTCGCCTTTACTCAACTTTATTCAAACCCACCAGCGAGGGTGGCACTTCTTCAGGACCATCAGATTGTACTAGTGATGCATATCTCTCTGCTGTTCAGCTTTCAGGACCAAGATAA 2475 0.4073 MGKHGSLFHVMDTLCLCILLSSEVVLASILKVGKVSPGFEGSQMNWIDRDGKFLVSNKGDFGFGFVTTANDTTLFLLAVVHMDSTKVVWVANRALPVSNSDKFVFDEKGNVFLQKGGTVVWSTDTSGKGVSSMELQDTGNLVLLGKDNRVIWQSFSHPTDTLLPMQDFTEGMELISEPGSNNLTYVLKIESGNVILYAGFQTPQPYWSLQKDSRIIVNNNGDVVASATLSANSWRFYDKNKSLLWQFIFAEDSAANANATWIAVLGSDGIITFSNLQSARSIVASPTRIPQDSCSTPEPCDPYNICTGDKKCSCPSVLSSSPNCKPGFLSPCNSKNSIELLKADDRLNYFALEFLPPSSKTDLIGCKTSCSENCSCLAMFFQSSSGNCFLLDRIGSFEKSDNDYGFVSYIKVSSDGGAGTGIGKSGSSNIQTIVVVIIVIITLLVISGMLFVGHRYFRKKQNLPESPPQENSEEDNFLENLTGMPIRFSYNDLETATNNFSVKLGHGGFGSVYKGVLPDGTQLAVKKLEGIGQGKKEFRAEVSIIGSIHHNHLVRLKGFCAEGTHRLLAYEYMANGSLDRWIFNKNKGEFLLDWDTRFNIALGTAKGLAYLHQDCDSKIVHCDIKPENVLLDDNFSAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPTKSSEKSHFPTFAFKMMEEGKVKDILDSKLKTYENGVDVRVHIAVKVALWCIQEDMSLRPSMTKVVQMLEGLCTVPKPPTCSPMASRLYSTLFKPTSEGGTSSGPSDCTSDAYLSAVQLSGPR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3615g00030 824 CDD STKc_IRAK 504 773 - -
Gabi3615g00030 824 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 43 782 - -
Gabi3615g00030 824 Gene3D - 45 157 IPR036426 -
Gabi3615g00030 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Gabi3615g00030 824 SUPERFAMILY Protein kinase-like (PK-like) 478 771 IPR011009 -
Gabi3615g00030 824 SMART blect_4 45 158 IPR001480 -
Gabi3615g00030 824 Pfam Protein kinase domain 502 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3615g00030 824 Pfam D-mannose binding lectin 87 168 IPR001480 -
Gabi3615g00030 824 ProSitePatterns Protein kinases ATP-binding region signature. 504 527 IPR017441 GO:0005524
Gabi3615g00030 824 FunFam Serine/threonine-protein kinase 41 156 - -
Gabi3615g00030 824 SMART serkin_6 498 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3615g00030 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 209 IPR036426 -
Gabi3615g00030 824 CDD B_lectin 47 158 IPR001480 -
Gabi3615g00030 824 FunFam serine/threonine-protein kinase PBS1-like 467 572 - -
Gabi3615g00030 824 ProSiteProfiles Protein kinase domain profile. 498 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3615g00030 824 Gene3D Transferase(Phosphotransferase) domain 1 573 778 - -
Gabi3615g00030 824 Gene3D Phosphorylase Kinase; domain 1 465 572 - -
Gabi3615g00030 824 ProSiteProfiles Bulb-type lectin domain profile. 39 156 IPR001480 -
Gabi3615g00030 824 FunFam S-receptor-like kinase 5 573 779 - -
Gabi3615g00030 824 PIRSF SRK 8 820 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3615g00030 Gabi-Chr3615 253934 256408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3615g00030 443 780 Receptor kinase-like Gene Family AT5G20050 46.045 6.90e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi3615g00030 Pkinase 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3615g00030 - - gmx:100787500 1330.85