Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3615g00007 ATGATGGATTCACCTGAACCTTCTAAGAACAATGGCAGTTCTTCTGCTTCCACCGTCAACACTTCTTCATCGGAATCTCCTCCAGTTCAAGAATCCCCCTTTATTAGTTTTGTGAACACTTTATCTCCAATAAAGCCTGTCAAGGCTTGTCATGGGGTACAAGGTTTTGTTGGACTCAATTCTCCACCTCATGTATTCAAATCACCACGTATTAGTTGTCACCGTGAAACACAGTTCTTGGAAAGGCCTCAAGGCACTCGGTTACCCAGTGGAGAAATATCTCAAAGTGATAATGGAGGCAACAGTCTTGTTGAAGCTCCTGGTGATTCCAAGAAAACAAATTCTCAACACCTACTGCCGGAGAGGACTATAACTGACACTCAGAAGGATTTTGACATAAAAAATGATGCAAATACCCAACACTGCAGTCCTCCACCATCTGTTGATGAATATTTGGCTGATCCTGGGGATATTGATCAAATCTATTCAGTCAACCCAGATGTGGAACAATCAACTGATGCAGATGAATCGCTAAGTGACATAATTCAGTCAATAACTCAGTCAAAGGAAATTATATTAAAATTTGATAGGAAAGATGGTCCTGGTGATAAAGCAGTAGAAACTTTGCCTGTGTCAGAGGAATCTAATAAGGTTTATCAAGAAAAGCTTGCATACGTTGAAGAACCTGAAAAAATAGAAGGGGAGGAAAAAGATGTTGAAAGGGCTTCTCAAGAGAACCCAAAGTTAGAGTCCAATTTATCTGCAGATGTTTTTGAGAAACAACATAGTCACGATTCACTTCCCCAGTGTGCAGGAAATGAACTACGTGATCATAATGATTCTACACCACAGTTGATGGGTGATCCTCTGCCGGATGTTAACGAAAGTGAAGATTGCAACGGGATGGTGTCAACCTCACATGTAGGTGCAGAGCATGTCTCGCAAGATGGTTCTGAGGCTAGTCTAAAGCATCATGGCATTCGTAGACGCTGCCTACAATTTGAGGAAACTGCTTCCAATGCTCTTGGAAATAATAAGTCTCATATGGAAATGAATGCAACTTCAAGCGAAATAAAAATGGTCAAGCTGTCCGAACCTATCACTTCCTTTTTTCCTCAACGAGGTAATGGAAACTTTCCTGTAACAAGTCCCAAGCCATCAGATTCTTTCATCTCTGAGTCTTCTAGCTTGATAGAACCTGCCGCTTTATATCCTGCAAGTGCTTATGATAACAGGAAACTAAGCCCTCCAGATGCTGGACCTAAGGAATTTGACGAACCTAGCCCCAGCAAGAAACAGAAGAAAACATCAATCACCACTGATAAAAATGGCTGTAAACGGTGCAACTGTAAGAAGAGTAAATGTTTGAAGCTTTATTGTGATTGTTTTGCTGCCGGATTGTATTGTACCGAACCTTGTTCTTGCCACGGCTGCTTTAATAGACACGAACATGAAGATAAGGTTGTTGAGACAAAGCTACAAATTCAATCCCGTAATCCAAATGCTTTTGCTCCCAAGATTACCGCCGAAACTCCGTCAAATAATATGGAGGATGAGAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTATGAAAAAATATTGTGAATGTTTTCAGGCTGAAGTTGGATGTTCCAGTGGATGTCGATGTGAGGGATGTAAGAATGTCTTTGGCAGAAAAGAAGATTCTGTTGCCTTGGAGCATGCTTTTAGAAGAGAAAGGGTGACCAGCAGTGTTGAAAAAGGATCAGATAGCACATTTCACTCTAAACTGGAAATGGTGGCAAGCAGGACAGATTTGTTAAAAACAGAGTTGTATGATCTACCCGGCCTCTCACCTCTAACGCCATCGTTACAATGCTCTGACCAAGGCAAGGAGGCTGGAAAATCCCGACTTCTTTTAGCAAATTACTCTCAATCTTCCGAAAATTTAAACAGCAGTCTTGCTCTTTTGGAAACAAATGAGATGTTAGGAACTGCCTCCTATGATTCGCAAGTTGATTGCAACAATGTGGACAACATTTTGGATCAATCATCACCAAAATGTAATTCAGTTGTTAACGTACTTCAGCTTAGTCCTCTGTCGAAGCATGAGTCAACGTCTGGTGGTTCATCGTTCTCTCCTAAGACAAATGAGTGGACAAACATTCCACAAGCCCGACTCTCCCATGGATGTATTCGCCATTTATCTGGCGGCTCTCTTCGTTGGCGTGGTTCACCAACTACCCCAAGGTCTACAGTAGATGAAACACCATATTTACAGTGTTTTGAATCAGATGGCAGGCTCTCTGGCATTCTAGAAGATGAAACTCCTGATATATTGAAGGAAGCTTCAACACCTATCAAGCCTGTGAAAGCAAATTCCCCTAACCAAAAGCGAGTTTCTCCTCCCCACAGTCATCTACGCGGGATTGGGTCAAGCTTCTCAGGAGGCTTCAAAAGTGGCAGGAAATTTATATTGCAAGCTGTACCTTCTTTCCCACCATTGACCCCTTGCATGGATTCCAAAGACAATGGCAATGAGGATTCGGGTAACAAAGCCAGCAAGTGA 2580 0.4213 MMDSPEPSKNNGSSSASTVNTSSSESPPVQESPFISFVNTLSPIKPVKACHGVQGFVGLNSPPHVFKSPRISCHRETQFLERPQGTRLPSGEISQSDNGGNSLVEAPGDSKKTNSQHLLPERTITDTQKDFDIKNDANTQHCSPPPSVDEYLADPGDIDQIYSVNPDVEQSTDADESLSDIIQSITQSKEIILKFDRKDGPGDKAVETLPVSEESNKVYQEKLAYVEEPEKIEGEEKDVERASQENPKLESNLSADVFEKQHSHDSLPQCAGNELRDHNDSTPQLMGDPLPDVNESEDCNGMVSTSHVGAEHVSQDGSEASLKHHGIRRRCLQFEETASNALGNNKSHMEMNATSSEIKMVKLSEPITSFFPQRGNGNFPVTSPKPSDSFISESSSLIEPAALYPASAYDNRKLSPPDAGPKEFDEPSPSKKQKKTSITTDKNGCKRCNCKKSKCLKLYCDCFAAGLYCTEPCSCHGCFNRHEHEDKVVETKLQIQSRNPNAFAPKITAETPSNNMEDENLTTPSSARHKRGCNCKRSMCMKKYCECFQAEVGCSSGCRCEGCKNVFGRKEDSVALEHAFRRERVTSSVEKGSDSTFHSKLEMVASRTDLLKTELYDLPGLSPLTPSLQCSDQGKEAGKSRLLLANYSQSSENLNSSLALLETNEMLGTASYDSQVDCNNVDNILDQSSPKCNSVVNVLQLSPLSKHESTSGGSSFSPKTNEWTNIPQARLSHGCIRHLSGGSLRWRGSPTTPRSTVDETPYLQCFESDGRLSGILEDETPDILKEASTPIKPVKANSPNQKRVSPPHSHLRGIGSSFSGGFKSGRKFILQAVPSFPPLTPCMDSKDNGNEDSGNKASK 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3615g00007 859 SMART CXC_2 528 569 IPR033467 -
Gabi3615g00007 859 SMART CXC_2 443 484 IPR033467 -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 416 442 - -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 80 154 - -
Gabi3615g00007 859 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 531 565 IPR005172 -
Gabi3615g00007 859 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 446 481 IPR005172 -
Gabi3615g00007 859 ProSiteProfiles CRC domain profile. 444 568 IPR005172 -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 792 817 - -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 228 291 - -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 88 122 - -
Gabi3615g00007 859 Coils Coil 232 252 - -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 372 392 - -
Gabi3615g00007 859 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 348 846 IPR044522 GO:0003700
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 837 859 - -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 409 442 - -
Gabi3615g00007 859 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3615g00007 Gabi-Chr3615 28498 34334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3615g00007 321 574 CPP Transcription Factor Family AT3G22760 42.857 1.38e-58 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gabi3615g00007 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3615g00007 K21776 - gmx:547664 904.82