Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3615g00006 ATGTTGTCCGAGTTGCAAGCCTTGTTCCATTTTCATGTTTCGTGTGACAATGGGACTGGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAGTCACCTAGGCTGAAGCATGATGCTCCAGGCCTTCTATCCATGGCAATTACTGATCGTGACACTCTTGGTTCTCATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGGAAGCATGTAGTCTTTGGCAAGCTTGTGCAAGGTCATAATATATTGAAGAAAATTGAAGATGTGGGTGATGAAGAAGGACATCCAACTGTAACTGTGAAAATAATTAATTGTGGTGAATATAATGAGGATGGAAAGAAGATAAATAAATTAAAACTAGGAAGGGATGGATCTTCTGAAGCCCATAATCATGAAGCACGACAGAAGGTGAAGCACAAAAAATCTTCAGGAGACAGAAGGAAAAGGAGAAAATACTACTCATCAGAATCGAATAGTACTTCAGATTCAGACATGGAATCTTCAAAAAGTGATAGTGATTCTGACTCGGATGTGTCTTCATCATCTTATACCAGTTCCTCCAGCGACGGCAGGCAGAGGAAGAGAAAGAGGTCCAGGAAAGATAAACATCGACAAGGAAAAAGAAGAGATAAACACCGAGACAAGAGACGAAGGAAACGAGATAAAAGATCAAAGCATAGATCAAGAAGGGAATCGAGCAGTCTTACTGATTCAGATAGTGAAAGTAAGAGTGACAATAGCTCTGATAGCAAAAGTCTTGATGCTCAAGGGAGAAATCAGAAGCATAAAGATCATTCTCAGAGAAATGCAGCTGAAGTTCAGTCTCCCTTAGTTGTAGAGAAAGAATTACCTCCCATGCATCTTAAAAAGAGGGAGGAAGTGGGTATGCTAGAGGAGGAATTCTCAAAGGAAAATGGAGAGCAGCATAGAAATGGCATTGGGGCCAACCACAGATCTGACAGAGGTGAAGAGAGGCAGCCTGACGTGATGGATGATCATCCAGGCAAATCTAGGAGCCGAAGCATGAGTCCTAAGCAAACCATGAGTAAGAATATATGTACTAGTCCAAAGAGTGAGAGCAAAAGCCCAAGCGTTAGTCCAAAAAGGAGATTGAGCAGAAGTCCTGTTAGAAGCATTAGCAGGAGTCCAAACAGCAGAAGCCCAGTGAGGGGCCGGAAGGAGAGAAGTATCAGTAGGAGCCCTGTTAGAACTCGTGATCATGAAAGTGTAAGTAGAAGCCCCGTTAGATCTCGCGATCGTAGAAATTTCCGCGAGAGCCCTGTAAGATCCCTTTCTCGGAGTCGCCGGAGCTGGAATTCTCCCAAAGCATCATCACGAAGAACGGTCAGCAGAAGCCCTGTAGGAGTGTCAAGAAAGAGCCTAAGCAGGAGTCCAATTAGATCATCTGCCAGAAGCTTAAGCAGAAGCTCCGGCAGGGTCCCTTTGAGAAGCATTAGCCAAAGTCCAGTTAGAGTGCTTAGCAGAGGCAATCGCCAGAGTTATTCTAGGAGTCGTAGCCCTGTCCGTCGGGAAAGGACACCTCATGGGAGAAGTTTGTCAAGGAGCGTGTCTCCTGATGCTTCACCAAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAACGATACTCTTATGCTAGAAGGTATAGAACGCCCTCTCGGTCTCCCGCGAGGTCATACCGCTATAATGGAAGAAGTGACCGCTATAATGGAAGAAGTGACCGTGACAGATATTCAGGTTACAGAAGGTACTCCCCTAGGCGTTATAGGGGCCCACAGCCACGTGGAAGAACTCCACCAAGGTACCGAACCAGGAGGAGCAGGACGCCATCTGTATCACGTAGCCCACGTTACCGAGCTCGACGATATAGCCGAAGCCGTAGCCCAGTTCGTAGTCATTCACCGGTTGATCCTCGTTCTCGGGCCTCTCCTCGTGCAGAGAGGCACATAGCATCATCCCAGAGCAGGAGTCCATCACGATCCAGGTCTTCAGTGGAATCACAATCTCCACGAAAAGCAAGCAGAGGCAACATGTCAAGGTCATCGTCTGGAAGCCCAGCTGGAAAGAAAGGCCTAGTCTCTTATGGAGATGGTTCTCCCGACTCAAGCCAAAGGTGA 2121 0.463 MLSELQALFHFHVSCDNGTGGESIYGSKFPDESPRLKHDAPGLLSMAITDRDTLGSHFIITLKADHHLDRKHVVFGKLVQGHNILKKIEDVGDEEGHPTVTVKIINCGEYNEDGKKINKLKLGRDGSSEAHNHEARQKVKHKKSSGDRRKRRKYYSSESNSTSDSDMESSKSDSDSDSDVSSSSYTSSSSDGRQRKRKRSRKDKHRQGKRRDKHRDKRRRKRDKRSKHRSRRESSSLTDSDSESKSDNSSDSKSLDAQGRNQKHKDHSQRNAAEVQSPLVVEKELPPMHLKKREEVGMLEEEFSKENGEQHRNGIGANHRSDRGEERQPDVMDDHPGKSRSRSMSPKQTMSKNICTSPKSESKSPSVSPKRRLSRSPVRSISRSPNSRSPVRGRKERSISRSPVRTRDHESVSRSPVRSRDRRNFRESPVRSLSRSRRSWNSPKASSRRTVSRSPVGVSRKSLSRSPIRSSARSLSRSSGRVPLRSISQSPVRVLSRGNRQSYSRSRSPVRRERTPHGRSLSRSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPARSYRYNGRSDRYNGRSDRDRYSGYRRYSPRRYRGPQPRGRTPPRYRTRRSRTPSVSRSPRYRARRYSRSRSPVRSHSPVDPRSRASPRAERHIASSQSRSPSRSRSSVESQSPRKASRGNMSRSSSGSPAGKKGLVSYGDGSPDSSQR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3615g00006 706 Gene3D - 10 111 IPR029000 -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 648 689 - -
Gabi3615g00006 706 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 85 IPR002130 GO:0000413|GO:0003755
Gabi3615g00006 706 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Gabi3615g00006 706 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 69 IPR002130 GO:0000413|GO:0003755
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 529 549 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 124 706 - -
Gabi3615g00006 706 SUPERFAMILY Cyclophilin-like 14 112 IPR029000 -
Gabi3615g00006 706 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 109 IPR002130 GO:0000413|GO:0003755
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 566 584 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 389 433 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 257 271 - -
Gabi3615g00006 706 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 108 IPR002130 GO:0000413|GO:0003755
Gabi3615g00006 706 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 16 109 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 136 150 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 285 341 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 434 505 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 194 229 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 176 190 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 230 250 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 342 388 - -
Gabi3615g00006 706 MobiDBLite consensus disorder prediction 633 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3615g00006 Gabi-Chr3615 19822 25758 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3615g00006 18 105 U-box Gene Family AT5G67530 43.333 1.69e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3615g00006 K09566 - cave:132189182 520.39