Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3612g00002 ATGTCTACTCCACAGGTGAAGAGCACTGTCCACATCATTCGCAACAAGCACGTCATACCAGCGGAATTTAAGCGTCCATTCCCGAAGATGTTGAGGATAACTTTCACGGACAACGATGCTACCGACTCCTCCAGCGACGAAGAACAACCTTTCAACTCTTCAATGCGCCGCCAACGACAAAAGAAGTACGTGGGGGAGATTATTTTCGAGAGGCGCAAAGCCAAAAAGAGAAACTCTGGCACCACCGGCAAAGGCAAAGCTCCGGCGAGTCAGCAAGCATCCTCCTCCTCCGGTAAGAAATACCGTGGAGTGAGGCAGAGACAATGGGGAAAATGGGTTGCTGAGATAAGAGACCCATCAAGACGCAAACGGTTGTGGTTGGGAACACATGACACAGCTGAGGAAGCTGCCAAGGCCTACAACCAAGCCGCCATTAAGCTGCGCGGACCTGATGCACTCATCAATATCATTGAGACACCAACCGCGGAGGTGCAGAGCTCGCCGGAGAAAACAAACCCGCCAGAGGTGGAAACTTCCATGGCTACAATGGACGGTTAA 558 0.5179 MSTPQVKSTVHIIRNKHVIPAEFKRPFPKMLRITFTDNDATDSSSDEEQPFNSSMRRQRQKKYVGEIIFERRKAKKRNSGTTGKGKAPASQQASSSSGKKYRGVRQRQWGKWVAEIRDPSRRKRLWLGTHDTAEEAAKAYNQAAIKLRGPDALINIIETPTAEVQSSPEKTNPPEVETSMATMDG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3612g00002 185 Gene3D AP2/ERF domain 99 157 IPR036955 GO:0003700|GO:0006355
Gabi3612g00002 185 MobiDBLite consensus disorder prediction 160 185 - -
Gabi3612g00002 185 CDD AP2 99 155 IPR001471 GO:0003700|GO:0006355
Gabi3612g00002 185 SUPERFAMILY DNA-binding domain 100 156 IPR016177 GO:0003677
Gabi3612g00002 185 PIRSF PTI6 1 183 IPR017392 GO:0003700
Gabi3612g00002 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 169 - -
Gabi3612g00002 185 MobiDBLite consensus disorder prediction 35 104 - -
Gabi3612g00002 185 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Gabi3612g00002 185 MobiDBLite consensus disorder prediction 36 51 - -
Gabi3612g00002 185 MobiDBLite consensus disorder prediction 52 76 - -
Gabi3612g00002 185 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Gabi3612g00002 185 MobiDBLite consensus disorder prediction 83 102 - -
Gabi3612g00002 185 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Gabi3612g00002 185 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Gabi3612g00002 185 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Gabi3612g00002 185 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3612g00002 Gabi-Chr3612 38664 39221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3612g00002 24 163 AP2-EREBP Transcription Factor Family AT4G11140 47.917 2.12e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3612g00002 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3612g00002 - - thj:104814895 147.517