Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3612g00001 ATGTCTACTCCACAGGTGAAGAGCACTGTCCACATCATTCGCAACAAGCACGTCATACCAGCGGAATTTAAGCATCCATTCCCGAAGATGTTGAGGATAACTTTCACTGACAACGATGCTACCGACTCCTCCAGCGACGAAGAACAACCATTCAACTCATCAATGCGCCGCCAACGACAAAAGAAGTATGTGGGGGAGATTATTTTTGAGAGGCGCAAAGCCAAAAAGATAAACTCCTCCGGTAAGAAATACCGGGGAGTGAGGCAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGACCCATCGCGACGCAAACGATTGTGGTTGGGAACATATGACACAGCTGATGAAGCAGCCAAGGCCTACAACAAAGCCGCCATTAAGCTGCGCGGACCTGATGCACTCATCAATATCATTGAGACACCAACCGCGGAGGTGCAGAGCTCGCCGGAGAAAACAAACCTGCCGGAGGTGGAAACTTCCATGGCTACAAAGGCCGGTTAA 507 0.501 MSTPQVKSTVHIIRNKHVIPAEFKHPFPKMLRITFTDNDATDSSSDEEQPFNSSMRRQRQKKYVGEIIFERRKAKKINSSGKKYRGVRQRPWGKWAAEIRDPSRRKRLWLGTYDTADEAAKAYNKAAIKLRGPDALINIIETPTAEVQSSPEKTNLPEVETSMATKAG 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3612g00001 168 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Gabi3612g00001 168 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Gabi3612g00001 168 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Gabi3612g00001 168 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Gabi3612g00001 168 MobiDBLite consensus disorder prediction 37 51 - -
Gabi3612g00001 168 PIRSF PTI6 1 167 IPR017392 GO:0003700
Gabi3612g00001 168 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Gabi3612g00001 168 CDD AP2 82 138 IPR001471 GO:0003700|GO:0006355
Gabi3612g00001 168 MobiDBLite consensus disorder prediction 146 168 - -
Gabi3612g00001 168 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Gabi3612g00001 168 SUPERFAMILY DNA-binding domain 83 139 IPR016177 GO:0003677
Gabi3612g00001 168 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 154 - -
Gabi3612g00001 168 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Gabi3612g00001 168 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3612g00001 Gabi-Chr3612 13201 13707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3612g00001 24 146 AP2-EREBP Transcription Factor Family AT4G11140 47.917 2.34e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3612g00001 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3612g00001 - - vra:106777252 148.673