Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3610g00001 ATGCACGGAGCGAGCAGCGGCGGCGGAGCGGCGGCGGCACCAATACCGAATGCGAACGGACCGCCGCCGTTCCTGAGCAAGACTTACGACATGGTGGACGACCCTTCCACGGATTCAATCGTGTCTTGGAGCCCAACCAACAACAGCTTCGTGGTTTGGAACCCACCAGAGTTCGCCAGAGACCTGTTGCCCAAACACTTCAAGCACAACAACTTCTCAAGCTTCGTTCGCCAGTTAAATACCTATGGTTTCAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGCCAGAAGCACTTGCTTAAGACCATAACCCGGCGAAAACCTGCCCATGGTCATAATCATCAACAGGCACTGCAATCACATAGACAAAGTTCATCAGTAGGGGAATGTGTTGAAGTTGGGAAGTTTGGACTTGAAGAAGAGGTTGAGATTCTTAAGAGAGATAAGAATGTGCTCACGCAAAAGCTTGTGAGGTTGAGGCAGCAGCAACAGGCTACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTTCAGGGAATGGAACAACGACAGCAGCAAATGATGTCATTTCTCGCAAAGGCTGTTCAGAGCCCTGGGTTCTTGGCTCAATTTGTACAACAGCAAAATGATGGTAATAGACGCATAACGGAGGCAAACAAAAAACGCCGGCTCAAGCAGGAAGCTATTGATGAAATGGAACATGCTGCTGCTTCTGACGGACAAATCGTTAAATATCAACCGCTGATAAATGAAGCAGCAAAAGCAATGCTAAAGAAGATCATGAAATTGGATACTTCTCGGCTAGAATCTTTTAGTAATAACCCTGATAATTACTTGATTTGTGAACCTTCTTCATCACCCAGTGCAATGGAAAGGAGAAGCTATTTAAGCCGAACTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTACAGTGCAGTCTTCTCACACTCCAGCTGCAACAGGGACTCAAGGGCACCCCCCCTCAACAGGAAAATCTCAAATTCTATCTTCTCCGCAAGTTGCAGCTTGTGAAGAAGCTACAAAAGCTCAATACCCTAACATTGATGTTTTGTTTGGAGCACCTGAAGCACCTTCCATCCCTGTTCCTCAAGCAGATGTAATCATGCCTGATCTCTCTACAATACCAGATATAGTGGCAGGAAGTATTCTTGATATTCCTGAAGAAAATTATATGGCGCCTGGGACATGCGATGAGGGATATATGGATCCTAATTCATTGGGAGTGAATGGGTCATTTCCCATTGATTTTGATAGTTTTTCACCTGAAGCGGACATTGATGATTTGTTGAGCGATCCTTTCTTTTGGGATGATATTGTGCAAACTCCAATGTCAGAGGAGACCGAGACCAATGTTGCTGAAGTATCCAAGGAGAATGAGGTGCCTCCAATGGAAAATGGATGGGACAAATCTCAACATATGGACCAACTTACAGAGCAGATGGGCCTACTTTCTTCTGATGCAAAAGGAGTTTGA 1518 0.4585 MHGASSGGGAAAAPIPNANGPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGHNHQQALQSHRQSSSVGECVEVGKFGLEEEVEILKRDKNVLTQKLVRLRQQQQATDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNDGNRRITEANKKRRLKQEAIDEMEHAAASDGQIVKYQPLINEAAKAMLKKIMKLDTSRLESFSNNPDNYLICEPSSSPSAMERRSYLSRTSGVTLQEVPPTTVQSSHTPAATGTQGHPPSTGKSQILSSPQVAACEEATKAQYPNIDVLFGAPEAPSIPVPQADVIMPDLSTIPDIVAGSILDIPEENYMAPGTCDEGYMDPNSLGVNGSFPIDFDSFSPEADIDDLLSDPFFWDDIVQTPMSEETETNVAEVSKENEVPPMENGWDKSQHMDQLTEQMGLLSSDAKGV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3610g00001 505 FunFam Heat shock transcription factor 1 17 114 - -
Gabi3610g00001 505 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3610g00001 505 Coils Coil 142 169 - -
Gabi3610g00001 505 Coils Coil 222 242 - -
Gabi3610g00001 505 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3610g00001 505 MobiDBLite consensus disorder prediction 302 347 - -
Gabi3610g00001 505 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3610g00001 505 Gene3D - 17 114 IPR036388 -
Gabi3610g00001 505 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 304 IPR027725 -
Gabi3610g00001 505 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3610g00001 505 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3610g00001 505 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3610g00001 505 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3610g00001 505 SUPERFAMILY "Winged helix" DNA-binding domain 19 113 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3610g00001 Gabi-Chr3610 33190 37950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3610g00001 4 499 HSF AT1G32330 50.480 3.01e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3610g00001 HSF_DNA-bind 4.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3610g00001 K09419 - gmx:732544 781.171