Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi360g00006 ATGGCTGAAAAAATCATAGAAAAAATATTTCAGATTTCTGTTACAGAACCTGTCGTTGATTGTATGATTAGCGAAGGAAAGACGCTCTACCGCTTGAGCCCTTTCCTTGAGCTTGATCTCGCCTATCGAATCCACTGTGACACCAGCGAGAAATTAATCTTCCAGTATCTCACCGATTGCTGGCAGCGAGCTCAAGAGGAGGACAAGATCCTAGAGGACAGCGAGGAGATAATAGAGGGAGAGCAAAAAACTATGATATCAGAAGTGGTTACCCAGACAAAGGCGCTTTGCGTTAAGTACTGCAAGACTCATTTGCGTTCCCTTTTGCGTTCCTGGCGTTTGCCTCTTTTACGGCTGATTTTTCCAGAGATAAAAGGTAGAGGAAAAAAGATTTCGCGGGAGTTTATGGATGATATGTTTGGGGACAATGAGGATATTGATAATTTAACCCCGATTTTTGAACGCCTATACGATGAGTTGACGAGTTTCGGAAATCATTTTCATCTTTTGGATTTTGAAGACTCTCTTCAGGCTTTGTTGTTTTTGGTTAATTTTCCCATTGGTGCAAAGTCCCTTGCGGGGCATACACGTTGGATTCCTTATCATTTTATCAGGAATAAAGCGCCTATTTTTGAAAGAACCTCCATCTTGGGTCTCTTTTTTCGGGTGACTGCCCTTCCTCTTTGTAGCCTTTTTCGCAACGAGGGGCCATTGATTTCTGACTTTTCAGATTTTCAATTGTTATCGTCATTCTCCACTATCAAAATTTTCACGAATAGATTGTATGATGGCCTTGCTAAAGTTCTCTTCATCCTCCTTGAAAGGCCCGATACTCGTGAAAATGTACTTGAGTATGTTGGGGAGGTGATCAGATTTAGTGCTGATCCAATGGATGACAACACTTTAGAGGCAGGCACGCTTGTAAGTGTCAGTGCCGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGTTTGATCCAAAATACTTACACTGTTCAAACCGTTTGAAGCTAAGTGGGTTGGCTGCTCGTCGTATATCATCATCAGAAGAAGTTTATAAATGGCTTGATAGTAAATACCCAGCTAAGGCTGAGGGGATCAATCAATATAATGATGCTCAACAATCTCAAGAAGCCAGCAGTTCTCATGATGAAATTTGCGAAAGGTTCTTTTTAACTGCAAGAGTCCTCAACTTAGGCCTTATAAATGCATTTATTGAGTACGAATATTTAGTTCAGGTTGATAGTGCGTGTGGTAAAGGTGATCGTGAATTGGAACTACACCAGTTCTACTCTAGCAAAATGCTTCGTTATGAAGCTCAGTTATTGGAGGATAACAAACTGATCGGGAATGCACTTTCCTTCGACCGCTTGATGATTGTTTGGATGCTTGACTTGGTTGGGGGAGCTAAGATGCCTCTACCACCAATTTTCCCAATGGAATTTGCTGCCCTACCGCAGTTTTTTGTATTAGATGCCATGGAAGTTCTAATATTTGCTTCTCGGATTCCAAAGGCATTAGATGGAGTGATGCTGGAGGAGTTCATGGATTTTATTGTTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATATATTAGTGAAAAAATGGTGAAAGTCTTGAACTGTTGGATGCCCAGTAAGAGCTTATCTACTACAGCTACTCTATTTGAAGGGCACCAATTGTCTCTTGAGTATCTTGTGAGGAATCTTCTAAAACTTTATGTTGACAATGAGTTCACTAGTTCTGAAGTTGAGTTCAAAGACTTCCACCGTCATATAGCTGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCATCGTGATGCTTGGAGACAGATTGTTGAAGAAGAGGAAAAGGACGTCTTTCTGAATTTCTTGAACTTTCTGATTAATAATAGTATTCGTCTATTTGATGAAAGTCTGCACCAAATTATTGATCTCAAAACAAGGCTGATTCTGAGGACAAGTGCATCGTTTAACGAGTTTATAAAGATTAAAAAGAGTATTCGGGTTGTTATTGGGTGGGCAAGTGAACATCTCAGGCTGCTTGCATTTGCTTCGGAGCATTTTACTGCTCCATTCCTTCTTCCTGAGATGGTTGAAAGTGTGGCTAGCAGGCTCAATCACTTTTTGCTGCAATTGGTGAGTCCTCAGAGTCAATATATTACTCTAGAAGACCACGAAAGTTACGAATCTCGTCCAAAGAATTTGCTAAAGCAGATTGGGCGCATATATGTTCATCTGGCTAGAGGTGACACAAAGTCCGTCTTCCCGGCTGCCATTACAAAGGATAGTCAATCATATAATGATAAGGTTTTTTTTGCTGCAGCAAATGTCCTGAACAATATCATAATTGATGATGGCTATGAGAGAATTATCCGGGAATTTATTCGACTTGGTGCTAAAGTTAGAGTTGCAGCTTTAGAGGCAGAGGCCATGTATACCGAAGCTACTCTAGGAGAAATACCAAATGAATTCATTGATCCACTTAAAGGCACCTTGATGAAAGATCCAGTTCTGTTACCTGCTTCAAAGATGATAATTGATCGATCTGTCATTCTGGGGCATCTTCTTAGTGATCAAAATGACCCGTTTACCGGTTTTGGACTTACTGCGGATATGCTTAAACCTGTTGGTGAACTAAAAGAAAGAATTGAAGAGTTTGTAAGATCTCGAACAAACAATAATGAATCCTAA 2718 0.404 MAEKIIEKIFQISVTEPVVDCMISEGKTLYRLSPFLELDLAYRIHCDTSEKLIFQYLTDCWQRAQEEDKILEDSEEIIEGEQKTMISEVVTQTKALCVKYCKTHLRSLLRSWRLPLLRLIFPEIKGRGKKISREFMDDMFGDNEDIDNLTPIFERLYDELTSFGNHFHLLDFEDSLQALLFLVNFPIGAKSLAGHTRWIPYHFIRNKAPIFERTSILGLFFRVTALPLCSLFRNEGPLISDFSDFQLLSSFSTIKIFTNRLYDGLAKVLFILLERPDTRENVLEYVGEVIRFSADPMDDNTLEAGTLVSVSAVMLRLCEPFLDANLTKRFDPKYLHCSNRLKLSGLAARRISSSEEVYKWLDSKYPAKAEGINQYNDAQQSQEASSSHDEICERFFLTARVLNLGLINAFIEYEYLVQVDSACGKGDRELELHQFYSSKMLRYEAQLLEDNKLIGNALSFDRLMIVWMLDLVGGAKMPLPPIFPMEFAALPQFFVLDAMEVLIFASRIPKALDGVMLEEFMDFIVMFMASPEFIKNPYISEKMVKVLNCWMPSKSLSTTATLFEGHQLSLEYLVRNLLKLYVDNEFTSSEVEFKDFHRHIAELLEYLWQVPSHRDAWRQIVEEEEKDVFLNFLNFLINNSIRLFDESLHQIIDLKTRLILRTSASFNEFIKIKKSIRVVIGWASEHLRLLAFASEHFTAPFLLPEMVESVASRLNHFLLQLVSPQSQYITLEDHESYESRPKNLLKQIGRIYVHLARGDTKSVFPAAITKDSQSYNDKVFFAAANVLNNIIIDDGYERIIREFIRLGAKVRVAALEAEAMYTEATLGEIPNEFIDPLKGTLMKDPVLLPASKMIIDRSVILGHLLSDQNDPFTGFGLTADMLKPVGELKERIEEFVRSRTNNNES 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi360g00006 905 ProSiteProfiles U-box domain profile. 828 902 IPR003613 GO:0004842|GO:0016567
Gabi360g00006 905 SMART Ubox_2 832 895 IPR003613 GO:0004842|GO:0016567
Gabi360g00006 905 FunFam Ubiquitin conjugation factor e4 a 828 905 - -
Gabi360g00006 905 PANTHER UBIQUITINATION FACTOR E4 3 902 IPR045132 GO:0000151|GO:0030433|GO:0034450
Gabi360g00006 905 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 827 903 IPR013083 -
Gabi360g00006 905 SUPERFAMILY RING/U-box 823 898 - -
Gabi360g00006 905 Pfam U-box domain 829 899 IPR003613 GO:0004842|GO:0016567
Gabi360g00006 905 Pfam Ubiquitin elongating factor core 217 810 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi360g00006 Gabi-Chr360 116861 123857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi360g00006 5 905 U-box Gene Family AT5G15400 45.614 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi360g00006 K10597 - gmx:100806175 836.639