Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3609g00036 ATGGCTGAGGGTTTTGAGGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTAAGAGTTGTTGTGGCTCAGAACCAACATGGTCTTGTTGAAACATCTTCTACACTCCCTCTTAGTTGTGCAACTTTGCTTCCTTTGTATGACCCTTCACTCATTTCTTCTGATTTGTTAACGTGTGCTAATCAACATGGTCACAGCTTCCTCAACAACCAAGCTTCGAAACAGAACTTGGGTAGTTGTGTTGTGAAAGAAGAAGGTTCAAATTTGATGATGGGGTTTGGAGGGGTTATGAATGGTTCTTCTTCTTCTTCTTCTTCTAATGTATCTTCTGTTTCTCACCATGGTTACTTGGATCCAGAATCTTCTTTGCCTTTGAACCCGAGTACAATTCAAGTTATTAGCAGCAGCAACAACAACAATAACAACAACAACAACCCTTTTTTCTACCACACACAGAGCCTGCAGAACTTTCGAGAGTTTGATCAGAGCTATAATGGTAGTGAAATCATGGTGTTCAAGCCTGAGCCATTGTCTTTGTCTCTGTCATCACATAACAGTGCTTCACAACAGGGTAATCTTCCTCTGGAGCTGAATCTTCAGCGATATGGGTCTGTGATTTATGGTGATAAGGTTAGTGGTGGTGGTGGTGGTGTGATTCCGGGTTTGGTTGGAGGAGTTAGTGCTTCTGCCTCGAATGAAGTTTCGAGGTGTTCAGTGCCACTGGGGCCATTTACTTGTTATGCTTCGATATTGAAGGGATCGAGGTTCTTGAAGCCTGCACAACAATTATTGGAAGAGCTATGTGATGTTGGGGGTCGTGGAATTTGTGTTGAGAAGATGGTGGTTGATGCATCGTTGATGGAGCCTCCTCCTGAGAGCTTAAGTGAAGATCCACTTGGGGATGAGGGTGAGGGTATCAAAAAGTCAAGGCTATTAACTATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAACAGATGCTTGCGGTAGTAACATCATTTGAGTATGTCTCAGACCTGAGCAATGCAGCTCCCTATGCAAGTTTGGCTTTAAAAGCCATGTCTAAACATTTTAGATGCTTGAAGAATGCAATTACTGACCAACTTCAGTTCACCAATAAGGCTCATTTTCACATAAGCAACAGGAAGGATGAATCTCCAAGGTTTGGCAACAGTGATAGAGGCCCTTACAACCAAAGGTCAGGGTTTTTTGAGCACCAACCTGTTTGGAGACCACAGAGAGGACTCCCTGAGCGTGCCGTGACTGTTCTCAGAGCATGGTTGTTTGAGCACTTTCTGCACCCCTATCCCACGGATACCGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTTATTAATGCTAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACACATGCTAGAAACACGGCAAGTTCAAAAGAATTCACAGAAGGAAGAACATTGTAGGAACAAATTAAGTGATCATTTACCTTCAGATAGCTCTCTTGTTTCTGAGAATCCATCTACTTCCACAGATAAATTTCAGGATACCCCTTTTAAGCGCGCTATAAATGAACTTCCTAATATACACGTTAGGAGTCAGGAACAACTGAATCTGCCTTGCACAGGAAATCAGCCAGTGGGTGTTGGAGTGAGCATGGGTGGTGCAAGCAGTAGTGTGTCACTGACACTAGGCCTTTATCAAAATCATGGGATTGGTTTAGCTGAACCCTTTCCCTTGAGTGCTGCTCAGCGTTTTGGACTTGCACTTGAAAACAATAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGATGTTATTGGAGGACAACTATTGCATGACTTTGTAGGGTGA 1899 0.4292 MAEGFEGYHVPQQSRRDKLRVVVAQNQHGLVETSSTLPLSCATLLPLYDPSLISSDLLTCANQHGHSFLNNQASKQNLGSCVVKEEGSNLMMGFGGVMNGSSSSSSSNVSSVSHHGYLDPESSLPLNPSTIQVISSSNNNNNNNNNPFFYHTQSLQNFREFDQSYNGSEIMVFKPEPLSLSLSSHNSASQQGNLPLELNLQRYGSVIYGDKVSGGGGGVIPGLVGGVSASASNEVSRCSVPLGPFTCYASILKGSRFLKPAQQLLEELCDVGGRGICVEKMVVDASLMEPPPESLSEDPLGDEGEGIKKSRLLTMLDEVYRRYRQYYQQMLAVVTSFEYVSDLSNAAPYASLALKAMSKHFRCLKNAITDQLQFTNKAHFHISNRKDESPRFGNSDRGPYNQRSGFFEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQVQKNSQKEEHCRNKLSDHLPSDSSLVSENPSTSTDKFQDTPFKRAINELPNIHVRSQEQLNLPCTGNQPVGVGVSMGGASSSVSLTLGLYQNHGIGLAEPFPLSAAQRFGLALENNNEGYVMSGFESQNRHFGRDVIGGQLLHDFVG 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3609g00036 632 SMART HOX_1 413 477 IPR001356 GO:0003677
Gabi3609g00036 632 SUPERFAMILY Homeodomain-like 415 480 IPR009057 -
Gabi3609g00036 632 MobiDBLite consensus disorder prediction 486 523 - -
Gabi3609g00036 632 SMART prehox3 246 370 IPR006563 -
Gabi3609g00036 632 MobiDBLite consensus disorder prediction 129 148 - -
Gabi3609g00036 632 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Gabi3609g00036 632 MobiDBLite consensus disorder prediction 104 124 - -
Gabi3609g00036 632 Gene3D - 416 478 - -
Gabi3609g00036 632 Pfam Associated with HOX 251 369 IPR006563 -
Gabi3609g00036 632 CDD homeodomain 413 474 IPR001356 GO:0003677
Gabi3609g00036 632 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Gabi3609g00036 632 MobiDBLite consensus disorder prediction 486 502 - -
Gabi3609g00036 632 MobiDBLite consensus disorder prediction 503 523 - -
Gabi3609g00036 632 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 136 497 - -
Gabi3609g00036 632 FunFam BEL1-like homeodomain protein 9 416 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3609g00036 Gabi-Chr3609 526743 534648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3609g00036 161 632 Homeobox Transcription Factor Family AT5G02030 49.225 1.82e-122 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi3609g00036 POX 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3609g00036 - - gmx:100805512 879.396