Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3609g00018 ATGGGTGGTGTTGCATGGACAGCAGAAGAAGATCACTTGCTTAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGCGTGCCTCATTTGGCTGGTCTAAATAGGTGCCGAAAAAGCTGTAGGCTAAGATGGCTGAACTATCTACGTCCCAACATCAAAAGAGGAAATTTCACAGACGAAGAAGTGGAAATGATTGTCAAACTCCACAAGTTATTGGGCAACAGGTGGTCACTTATTGCAGCAAGGTTACCAGGAAGGACTGCAAATGATGTGAAGAACTATTGGAACTGTCATCTGAGTAAAAAATTAAATGCTCAAGAAGCAGAAGAAGAGAGAGAAATTGACATAAACCTTGATGTTATTAAGACCCAGCCTAGAAGCATTGATTCAAGCTCAGTCAACAAAAGGAGCCAGGGTGAGTCTCCAAGTTTTCTACAAGTACCACACGAGAGTGGCATTTCCTCATCGCCAACATTTGATGTTGATGGACATAGCCAAATGCTTGCAATAGAGGAAGACAACATGTATTCATGCTTGGACCAACAGGGCAATATTGTTGGTGTGTTGCCAATGGACTTTCAATTTGAAGAAGTTAAAGCAATGAGTAATGGACAGAGTAGCAGCCAGTGGGATTGGGATGACTTGCTCTTTGACTTGGACATGTATAATGATTCTTCTAGCTGCTAG 693 0.4199 MGGVAWTAEEDHLLKKCIQQYGEGKWHRVPHLAGLNRCRKSCRLRWLNYLRPNIKRGNFTDEEVEMIVKLHKLLGNRWSLIAARLPGRTANDVKNYWNCHLSKKLNAQEAEEEREIDINLDVIKTQPRSIDSSSVNKRSQGESPSFLQVPHESGISSSPTFDVDGHSQMLAIEEDNMYSCLDQQGNIVGVLPMDFQFEEVKAMSNGQSSSQWDWDDLLFDLDMYNDSSSC 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3609g00018 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 136 - -
Gabi3609g00018 230 SMART sant 2 52 IPR001005 -
Gabi3609g00018 230 SMART sant 55 103 IPR001005 -
Gabi3609g00018 230 Gene3D - 58 121 - -
Gabi3609g00018 230 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Gabi3609g00018 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Gabi3609g00018 230 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Gabi3609g00018 230 MobiDBLite consensus disorder prediction 129 160 - -
Gabi3609g00018 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Gabi3609g00018 230 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Gabi3609g00018 230 FunFam Myb transcription factor 3 55 - -
Gabi3609g00018 230 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Gabi3609g00018 230 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Gabi3609g00018 230 CDD SANT 58 101 IPR001005 -
Gabi3609g00018 230 Gene3D - 4 55 - -
Gabi3609g00018 230 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3609g00018 Gabi-Chr3609 200759 202223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3609g00018 5 196 MYB Transcription Factor Family AT1G66370 46.188 4.37e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3609g00018 Myb_DNA-binding 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3609g00018 K09422 - gmx:100798101 304.679