Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3609g00003 ATGAGGGCTTGTTGCTCTAAATTCTTTCTGTGCTGGTTCCACGCCAACCTCAAACCTTCTGTGCTTGAATCCTCTGACCAAGAAAATGGTGGCAAGAGTGAAAAAAACTTGTGGCCGAGTTTTAGTGAGTTCAGCTTGGAGCAACTGAAGGGTGCCACAAACGGGTTCTCATCAGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTTTACAAAGGGAAGCTTGAGAATGGACAATGGATTGCCATCAAACGTTTCAACAAGTTCGCTTGGCCTGATTCTCGCCAATTCATCGAGGAAGCCAGACAAGTTGGGAGCCTTAGAAGTGAACGTTTAGCAAATTTGATTGGTTGTTGCTACGAAGGGGATGAGAGGCTGCTAGTAGAAGAGTTTATGCCCCATGAGACTCTGGCTAAGCATCTCTTTCATTGGGAGGCACAGCCCATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGCTTGTATCATGATCTCAATGCCTATAGGATTTTGTTTGATCAGGATGGTAATCCTAGGTTGTCGTGCTTCGGGCTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGCACCAACTTGGCTTTCACCCCTCCTGAGTACTTAAGAACTGGTAGAGTGACACAAGAGAGCGTGGTTTACAGTTTTGGAACCCTGTTGCTAGATCTCTTGAGTGGTAAACATATTCCCCCAAGCCATGCACTTGACCTGATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGTTTACAATATGAAGCTCGTGAGAGACCAAATGCAAAGTCTCTAGTTGCATCTCTCATGTCACTTCAGAAAGAAACAGAGGTGGCCTCATATGTTCTGATGGGTCTCCGGCATGAAGCTGCACCCTCAACAAAACCATTGTCATTGACACCTTTTGGTGAAGCTTGTTTGAGATTGGATCTTACTGCCCTACATGAAATATTAGAGAAGAGTGGTTACAAGGATGATGAAGGAATTGCCAATGAGCTTTCCTTTCAATTATGGACCAGTCAAATGCAGGAGACCTTGAATTTAAAGAAGCGTGGAGATAATGCTTTTAGAGCTAAGGACTTTGTCACTGCCATAGACTGCTACACTCAATTCATAGATGGAGGGACAATGGTGTCACCTACAGTGTATGCAAGGCGCTGCTTATCTTATTTGATGAATGACATGCCACAAGAAGCTCTAGGGGATGCTATGCAAGCCCAAGTGGTATCTCCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAGCTTGTCTTTTCAGCCTCAGAATGGAAAATGATGCCCATGAAACTCTCAAAGATGGGACTAACATGGAAGCCAGAAAAAACAAAAATTGA 1476 0.4424 MRACCSKFFLCWFHANLKPSVLESSDQENGGKSEKNLWPSFSEFSLEQLKGATNGFSSENIVSEHGEKAPNVVYKGKLENGQWIAIKRFNKFAWPDSRQFIEEARQVGSLRSERLANLIGCCYEGDERLLVEEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTQESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLMSLQKETEVASYVLMGLRHEAAPSTKPLSLTPFGEACLRLDLTALHEILEKSGYKDDEGIANELSFQLWTSQMQETLNLKKRGDNAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPEWPTALYLQAACLFSLRMENDAHETLKDGTNMEARKNKN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3609g00003 491 SUPERFAMILY TPR-like 387 488 IPR011990 GO:0005515
Gabi3609g00003 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Gabi3609g00003 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 19 490 IPR045845 GO:0004672|GO:0009742
Gabi3609g00003 491 Gene3D Tetratricopeptide repeat domain 383 491 IPR011990 GO:0005515
Gabi3609g00003 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Gabi3609g00003 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Gabi3609g00003 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Gabi3609g00003 491 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3609g00003 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Gabi3609g00003 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Gabi3609g00003 491 SUPERFAMILY Protein kinase-like (PK-like) 34 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3609g00003 Gabi-Chr3609 34120 38141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3609g00003 19 310 Glycoside Hydrolase AT3G07070 33.438 2.43e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi3609g00003 PK_Tyr_Ser-Thr 6.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3609g00003 - - gmx:100814477 923.694