Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3608g00037 ATGGCACGCCCTTGTTTCCACAAGCTTATTCTGCCTTCCACTCTTCAATCCAGGCAACTGAGGATTCCAGATTATTTTATGAGGAAATATGGGGGTGAACTTTCTACGATTACTACCCTCACTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTAAAAAAGGTAGACAACAGATTTTGCTTCCTTGATGGGTGGCAAGAATTTATTCAACGCTACTCCGTAGGCGTTGGATACTTGTTGGTATTCATGTATGAAGGAAATTCATCTTTCATTGTTCATATTTTTAATTTGAGTACTTCCGAGATAAATTATCAAACATCCATGAGAAGCCGTAATGAAGGGCATTACTTTGCAAATTATCATCATATTTTTGACGAAATGGAAGATGTAGACTCCTTTGAATTCTTGGATTCGTCATCTTCGCGCCTTACTTCTGGTGGATTGCAAAACAAGGCTTTTGCTGGATCTGTAGATCAACTGACCCCTGGGAAGAGTCATACTCCATCATTGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGCGTAAACTGGGGAGATAGTGCAAGTGCTTTTTCTTCAAAGGGTGCCAATTCCCAAGACATTCAATCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTATTCTAATGAGGAAGGGGTTAATAAAACTGTAAGAAGGAAGCGAAAATCAGATCCTGATGGCGAGGAACCCTCTGCAGAACATGAGGAGGAAGCAGAAATGCGCTATAGATTTTATGAAAGTGCATCTGCAAGAAAAAGAACCGTGACAGCGGAAGAAAGAGAAAGGGCAATTAATGCAGCAAAAGCATTTGAACCACCCAATCCATTTTGTCGAGTTGTCCTTCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGGTTCATTAAACTTCAAATCTCTGACGGGAGACAGTGGTCGGTTCGCTGCCTTTATAAAGGAGGTCGAGCAAAGTTAAGCCAGGGATGGTTTGAATTTACACTGGAGAACAATTTGGGGGAAGGTGATGTTTGTGTGTTTGAGCTACTTAGAATGAAGGATGTAGTGTTGCATGTTACAGTATTTCGTGTAACTGAGGATACAGGGTTGTTGAACCCTCCTATGCAGCAGAGCCAAAATGTGAGCCATTCTAAACTGCTGAATCCTCACTTGCAGCATCGTGTCAGTACAACCAAATCGGTTAGAATTTGA 1296 0.412 MARPCFHKLILPSTLQSRQLRIPDYFMRKYGGELSTITTLTVPDGSVWRVGLKKVDNRFCFLDGWQEFIQRYSVGVGYLLVFMYEGNSSFIVHIFNLSTSEINYQTSMRSRNEGHYFANYHHIFDEMEDVDSFEFLDSSSSRLTSGGLQNKAFAGSVDQLTPGKSHTPSLQNLFNGGSKLNRVNWGDSASAFSSKGANSQDIQSTRDIGVQFNAVEFKRSTEELKLRYSNEEGVNKTVRRKRKSDPDGEEPSAEHEEEAEMRYRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWSVRCLYKGGRAKLSQGWFEFTLENNLGEGDVCVFELLRMKDVVLHVTVFRVTEDTGLLNPPMQQSQNVSHSKLLNPHLQHRVSTTKSVRI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3608g00037 431 CDD B3_DNA 4 96 IPR003340 GO:0003677
Gabi3608g00037 431 Pfam B3 DNA binding domain 7 96 IPR003340 GO:0003677
Gabi3608g00037 431 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Gabi3608g00037 431 PANTHER B3 DOMAIN-CONTAINING 3 385 - -
Gabi3608g00037 431 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Gabi3608g00037 431 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Gabi3608g00037 431 MobiDBLite consensus disorder prediction 233 259 - -
Gabi3608g00037 431 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Gabi3608g00037 431 Gene3D - 275 395 IPR015300 -
Gabi3608g00037 431 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Gabi3608g00037 431 CDD B3_DNA 296 391 IPR003340 GO:0003677
Gabi3608g00037 431 Gene3D - 1 99 IPR015300 -
Gabi3608g00037 431 SMART B3_2 298 393 IPR003340 GO:0003677
Gabi3608g00037 431 SMART B3_2 6 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3608g00037 Gabi-Chr3608 543061 546404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3608g00037 1 397 B3 DNA Binding Superfamily AT3G18990 51.117 1.09e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3608g00037 B3 1.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3608g00037 - - gmx:100789352 721.465