Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3608g00024 ATGGATCGTTCTGCGATCACTGCTGGGCCAGGAATGGATATGCCGATCATGCATGACAGTGACAGGTATGAGCTCGTTCGTGATATTGGGTCTGGGAATTTTGGGGTTGCCAGGCTCATGAGGGACAAGCACACTGAGGAGCTTGTTGCTGTTAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACGAAGGGAAATTATAAATCATAAATCACTGAGGCACCCCAATATTGTGAGGTTCAAGGAGGTTATATTGACCCCTACCCATTTGGCTATTGTCATGGAATATGCTTCCGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTTAGCGAGGATGAGGCACGCTTCTTCTTTCAACAACTTATATCAGGGGTTAGCTACTGTCATGCCATGCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGCTGGATGGTAGTCCAGCTCCTCGTTTAAAGATTTGTGATTTTGGGTATTCGAAGATCTTGACTCGAATCTTGACTGTCTTACTTTTGCAGTCCTCAGTGCTACATTCGCAACCAAAATCTACAGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGGAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTGTATGTCATGTTGGTGGGTGCATATCCTTTCGAGGATCCCGAGGAACCTAAAAATTTCCGGAAGACAATTCATAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTCCCGAATGCCGTCATCTGATCTCAAGGATCTTTGTTGCAGACCCTGCACAGAGAATAACTATCCCTGAGATTAGAAACCACGAGTGGTTTTTGAAGAATCTTCCAGCTGATCTCATGGTTGAGAATACAATGAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAGAGCAGTGAAGAAATCATGCAGATAATAAGTGAGGCTACAATTCCTGCAGCTGGAACTCAATCTCTCAATCAGTATCTTACTGGTAGTTTGGATATTGATGATGACATGGATGAGGACCTAGAGTCAGATCCTGAACTTGATATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1128 0.4309 MDRSAITAGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGDKIDENVRREIINHKSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKILTRILTVLLLQSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVHISPECRHLISRIFVADPAQRITIPEIRNHEWFLKNLPADLMVENTMNNQFEEPDQPMQSSEEIMQIISEATIPAAGTQSLNQYLTGSLDIDDDMDEDLESDPELDIDSSGEIVYAM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3608g00024 375 Pfam Protein kinase domain 23 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3608g00024 375 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Gabi3608g00024 375 SUPERFAMILY Protein kinase-like (PK-like) 16 331 IPR011009 -
Gabi3608g00024 375 ProSiteProfiles Protein kinase domain profile. 23 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3608g00024 375 SMART serkin_6 23 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3608g00024 375 Gene3D Transferase(Phosphotransferase) domain 1 99 299 - -
Gabi3608g00024 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gabi3608g00024 375 PANTHER SERINE/THREONINE KINASE 22 320 - -
Gabi3608g00024 375 FunFam Serine/threonine-protein kinase SRK2E 99 299 - -
Gabi3608g00024 375 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Gabi3608g00024 375 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3608g00024 Gabi-Chr3608 312486 316503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3608g00024 22 294 CBL-interacting serine-threonine protein kinases AT4G24400 44.404 2.25e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gabi3608g00024 Pkinase 2.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3608g00024 K14498 - gmx:100804702 689.108