Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3608g00016 ATGACTGGAATCCAAACTTGCTTTGACCATATGGATATGGTTCAAAATGAACAGGAAATATCGCTGCTCTCACAACTACAATCAATCGAAGTTTCTAGGAGTTCTATCATTGTTTTTTCTGAATCATACGCTGGCTCTAGGTGGTGTCTACGGGAGCTAGAAAAAATCATGGAGTGTCACAGAGCCAAGGGTCAGGTGGTTTTGCCAGTGTTCTATGGCGTGAAAATGTGGGAAGTACGCAAGCAAAGCGGTAAGTTTGGACATGTGTTTGAACAAATGATAAAGAGAACATCAGTGCAGGAAAAAACTCAGTTGAGTTGGAGGAGAGCCCTGGCTGAGGCTGCTTTCTTTCCCGGTTGCTTTGTGCCGTCTTACAGTGATACTGTTTTGGACATTGATGCTTTTGGTGAAAAAAACAAGGTAGCTGGGATTATTGTTGACGCAGTTCATATGATACTAGGTGGTAAATATTTGTCCCGCCCGCGCCATCCAGTTGGGATTGATTTGCATGCGAAAAATGTGTTTGACTTGTTGAGTTACAGTAGTGAAGGAGTTCACTTTGTAGGAATATGGGGAAAGGGAGGAATTGGTAAAACAGCTCTTGCCAAAGTCATTTACAACAGAATGTATGACAGTTTTGAGGTTTCCAGTTTCCTTGCAAATATTAATGATTTATGGATGCGGGACAACGGCAAAGATTATCTACTAAAACATCTTCTTTCAGACATGGTTAATACAGAAGACATGAAAATATATAGCGTTGAAATGGAAAAAATACTTTCTCATAAACGAGCACTTCTAGTATTTGATGATGCGGGTGAAGTGGACCAACTGATATCGTTATGTGGAAGTCGTGAATGGTTTGGTCCTGGGAGTGTAATATTGATTACAACTAGACAAAAGTATTCATATCCTTTCCTTGAATTCGATTTTACATATGAAATGAAGGAAATGGACACAAGTCAATCACTCGAGCTTTTTAGCTGGCATGCGTTTAAGCATTTTAGTCCTAGCGATGGTTTCATTAAACTCTCAAGAAAAGCAATTACTCATTGTGGAGGACTGCCACTGGCTCTGGAAGTTTTGGGCTCGTTGTTACTTGACAGAACAACATCAGAGTGGAAAGGTGTATTGAGGCTACTTGAAAGAAATGAAAGTTATGCAGTGTCCAAGATGCTAAAAATGAGCTATGAATTTCTAGATGATTATGAGAAAAAAACATTCCTTGAAATAGCTTGTTTCTATATTGGAAAGGACAGACACAGTATTACACAATTATTAAATGGCTGTGGACTTCCTGCAGAAACCGGGATAAGTAAACTGATTGACCGGAGCCTTCTAAAGGTTGATAAGAATAACAAGCTTGAAATGCATGATATGTTGCAAAAGATGGGAAGAGAAATGAATCATTTTAAGCCAAAATCCAAATGCATCCACAATGTATTCTTGAGTTTCAGAGGACAAGACACTCGAAGGTCTTTTACTTCTCATCTCTGTGATGCTTTTCAAAATGCTGGTGTTGATGTTTACATGGATGACAAACTTGAAAGGGGAGAAGATATCTCATCCTCGTTGTTGCAAGCAATTGAAGGTTCTAGAATTTCAATAATCATTTTCTCAATAAACTATGCTAATTCAAGATGGTGCCTTCAAGAACTGGAGAAAATCATGGAGTGTCATAGAACTGTTGGTCAAGAAGTTCTACCTGTATTCTATGGTGTGGAACCGTCGGAAGTGCGTAACCAAATCGGAACTTTTGGAAAAGCATTTGAAGGACTTGTGCAGAGAAGCTCAGCTACCAAAGATATGATTATTAGTTGGAAAAGAGCACTCCGTGAAGCTGCAAACTTGTCTGGATGGAATTTAAATAATTACAGAACTGAAATCAATTTGATTGGTGATATTCTTAAAACTGTTACCACAAAGCTAGATGATGGCACATACTTATTTGTCGCTGATCACCCAGTGGGAGTGGAATCTCGTGTGCAGGATATGATTCAATTGTTAAGTGGTAAATTAAATGAGGTTCTCATAGTAGGCATCTTGGGCATGGGAGGAATTGGAAAAACAACCATTGCCAAAGCCATTTACAATGAAATCAATCAAAATTTTGAAGGTAAAAGTTTCCTTGCAAATATAAGGGAAGTTTGGGACCAAGATAATGGCCAAGTTTGTTTGCAAGAACAACTTCTTTCAGGTATCTTGAAAACGAGAAGGATGAAATTACATAACATTGAATTGGGGAAAACTATAATAAAGGAAAGCCTTTGCCAAAAACGTGCGCTTGTTGTACTTGATGATATAAATAATTTGGACCAGCTAAATGCTTTGTGTGGAAATCGTGAATGGTTTGGTCAAGGGAGTAGGTTAATCATCACAACTAGAGATGAACATTTACTGAATGTTCTTCAAGTGGACAATATATACAGAATGAAAGAAATGGAAGATAGTGAGTCTCTTGAGCTTTTCAGTTGGCATGCATTTAAGCAAGCTGCTCCAATAGCAGATTTCATTGAACTCTCGAGAAGGATTGTTGCTTACTCTGGAAGACTACCACTAGCCCTTGAAGTTCTTGGCTCTTACTTGTTTGAAAGGGCAATTGCTGAGTGGGAATGGGCGTTGTCAAAACTTCAAATTATTCCCAATGATCAAATACAGAAGAAATTAAAATTAAGTTTTGATGGTTTAAGCGATGATATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGACAGAAACTATGTTACTCAGATTTTAGATGGTTGTGGTCTTCATGCAGAAATTGGGATGACTGTCCTTATAGAGCGAAGCCTTGTAAAAGTTGATAAGAATAACAAGCTTGAAATGCATGATCTGCTGAAAGTCATGGGAGGAGAGATCATTCGTGAGACCTCACCAGAGAAGCCTGAGAAGCGTAGCAGATTATGGTTCCATGATGATGTGGTAGATGTGATGACAAACAACACTGCAACAATAGCTGTCAAGGGACTGTCTTTCAGTTTACCAAAAACCAATGATGTTAGTTTTGATACTAAAGCATTTAAGAAGATGAAGAGACTCAGATTGCTTCAACTTGGTCATGTTAAACTTACTGGGGATTATGAATATTTATCAAAAGACTTGCGCTGGCTCTGTTGGCGTGGATTTCCTTTTAGACACATTCCTGTGAACTTTTATCAGAAAAAGATAGTTGCTATTGACTTAAAGTACAGCAATCTACATCTAGTCTGGAAGGAGCCGCAGTTGCTGGATAGGCTGAAAATCCTCAATCTGAGTCATTCCAAATACTTGACACGAACCCCGGACTTTTCAAAACTACCAAATCTTGAAAAGCTAGTGCTCAAAGATTGTCCACAATTGTTGACGGTTCACCGGACAATTGGAGATCTCAAATATCTCATTCTGGTAAATTTGAAGGACTGTAAATCCCTCAACCGCCTCCCAAGAAGTATCTACAAGCTGAAATCTCTGAAATCTCTTGTTCTTTCTGGCTGTTCAAAAGTTGACAAATTGGAAGAGGACATCATGCAAATGGAATCCTTGACAAATCTAGTGGCTGATAACACTGCTATCACACAAGTTCCCATTTCTCTAGTGAGATCAAAAAGCATCAAATATGTGTCTCTGTGTGGCTATGAAGGATTATCACGTGATGTATTTCCTCGACTAATTTTGTCTTTTATGTCGCCAACAAGAAATCCTATGTATCAAGTTTTTGGGAGCATTTCATCTTCACTTCGAAGTCTTTCACTTGGTTTATCTGCCAAAAATTATGCAGAATCAGAATCAAGACCAAGTACATCTCAGATAACATATACAGATACTCCCAAATTAATTGACTTTGAGAACTCCATTCACATGTCAGGGTCAGAAAATTTCACAAGTTCTCTTGTCATTCAAGCTGGAGAGCGCAGCAAAGCCACTGATACTCTTACCGAGAGTATTTCACAGATAGCATATACAGAAACTCCCACATCAATTGATTTTCAGAATTCCATTAGCATTTCAGGGTCTGAAAATTTCAACAGTTCTCTTGTCATTCAAGCTGGAGAGTGCAGCAAAGCCACTGATACTCTTATAGAGAGCATTTCACAGGAATGGACTAATGATGGATCTGGTGACTGTTCTTTTCCTGGTGGCATATATCCTAATTGGCTAACCTTCAAAGGAGAAGGATCCTCAGTATTGTTTAAAGTGCCTAATACTGGTTGCAAGTTGAAAGGGGTGACTCTACGCATCATTTATTCATCTTCCCTTGACAACATGGCTTCTGAATGTGATCTTCTTAGTATCTTGATAATAAATTACACAAAGAATACCATTCAGCCCTACAAGCGAGACACAACAACTTCCTTCAAACATGAAGATTGGCAAGGATTGGTTTCAAATCTTGAACCCGGGGATGAAGTGGAGGTTGTTATAGTTTTTGGACATCGATTTACTGTGAAGAAGACAATAGCCCATCTAATATATGATGAATCAACCAACAAGGATCAAATCTAA 4518 0.3842 MTGIQTCFDHMDMVQNEQEISLLSQLQSIEVSRSSIIVFSESYAGSRWCLRELEKIMECHRAKGQVVLPVFYGVKMWEVRKQSGKFGHVFEQMIKRTSVQEKTQLSWRRALAEAAFFPGCFVPSYSDTVLDIDAFGEKNKVAGIIVDAVHMILGGKYLSRPRHPVGIDLHAKNVFDLLSYSSEGVHFVGIWGKGGIGKTALAKVIYNRMYDSFEVSSFLANINDLWMRDNGKDYLLKHLLSDMVNTEDMKIYSVEMEKILSHKRALLVFDDAGEVDQLISLCGSREWFGPGSVILITTRQKYSYPFLEFDFTYEMKEMDTSQSLELFSWHAFKHFSPSDGFIKLSRKAITHCGGLPLALEVLGSLLLDRTTSEWKGVLRLLERNESYAVSKMLKMSYEFLDDYEKKTFLEIACFYIGKDRHSITQLLNGCGLPAETGISKLIDRSLLKVDKNNKLEMHDMLQKMGREMNHFKPKSKCIHNVFLSFRGQDTRRSFTSHLCDAFQNAGVDVYMDDKLERGEDISSSLLQAIEGSRISIIIFSINYANSRWCLQELEKIMECHRTVGQEVLPVFYGVEPSEVRNQIGTFGKAFEGLVQRSSATKDMIISWKRALREAANLSGWNLNNYRTEINLIGDILKTVTTKLDDGTYLFVADHPVGVESRVQDMIQLLSGKLNEVLIVGILGMGGIGKTTIAKAIYNEINQNFEGKSFLANIREVWDQDNGQVCLQEQLLSGILKTRRMKLHNIELGKTIIKESLCQKRALVVLDDINNLDQLNALCGNREWFGQGSRLIITTRDEHLLNVLQVDNIYRMKEMEDSESLELFSWHAFKQAAPIADFIELSRRIVAYSGRLPLALEVLGSYLFERAIAEWEWALSKLQIIPNDQIQKKLKLSFDGLSDDMEKDIFLDICCFFIGKDRNYVTQILDGCGLHAEIGMTVLIERSLVKVDKNNKLEMHDLLKVMGGEIIRETSPEKPEKRSRLWFHDDVVDVMTNNTATIAVKGLSFSLPKTNDVSFDTKAFKKMKRLRLLQLGHVKLTGDYEYLSKDLRWLCWRGFPFRHIPVNFYQKKIVAIDLKYSNLHLVWKEPQLLDRLKILNLSHSKYLTRTPDFSKLPNLEKLVLKDCPQLLTVHRTIGDLKYLILVNLKDCKSLNRLPRSIYKLKSLKSLVLSGCSKVDKLEEDIMQMESLTNLVADNTAITQVPISLVRSKSIKYVSLCGYEGLSRDVFPRLILSFMSPTRNPMYQVFGSISSSLRSLSLGLSAKNYAESESRPSTSQITYTDTPKLIDFENSIHMSGSENFTSSLVIQAGERSKATDTLTESISQIAYTETPTSIDFQNSISISGSENFNSSLVIQAGECSKATDTLIESISQEWTNDGSGDCSFPGGIYPNWLTFKGEGSSVLFKVPNTGCKLKGVTLRIIYSSSLDNMASECDLLSILIINYTKNTIQPYKRDTTTSFKHEDWQGLVSNLEPGDEVEVVIVFGHRFTVKKTIAHLIYDESTNKDQI 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3608g00016 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 908 IPR027417 -
Gabi3608g00016 1505 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 479 1197 IPR044974 GO:0006952
Gabi3608g00016 1505 Pfam TIR domain 3 113 IPR000157 GO:0007165
Gabi3608g00016 1505 Pfam TIR domain 479 643 IPR000157 GO:0007165
Gabi3608g00016 1505 Gene3D Ribonuclease Inhibitor 1000 1261 IPR032675 -
Gabi3608g00016 1505 SUPERFAMILY L domain-like 969 1227 - -
Gabi3608g00016 1505 PRINTS Disease resistance protein signature 1157 1173 - -
Gabi3608g00016 1505 PRINTS Disease resistance protein signature 755 769 - -
Gabi3608g00016 1505 PRINTS Disease resistance protein signature 678 693 - -
Gabi3608g00016 1505 PRINTS Disease resistance protein signature 848 862 - -
Gabi3608g00016 1505 Gene3D - 318 401 IPR042197 -
Gabi3608g00016 1505 Gene3D - 813 897 IPR042197 -
Gabi3608g00016 1505 Gene3D - 155 305 IPR027417 -
Gabi3608g00016 1505 Gene3D - 647 808 IPR027417 -
Gabi3608g00016 1505 SMART AAA_5 675 818 IPR003593 GO:0016887
Gabi3608g00016 1505 SMART AAA_5 184 341 IPR003593 GO:0016887
Gabi3608g00016 1505 SMART till_3 478 617 IPR000157 GO:0007165
Gabi3608g00016 1505 SMART till_3 2 117 IPR000157 GO:0007165
Gabi3608g00016 1505 Gene3D - 1 154 IPR035897 -
Gabi3608g00016 1505 Gene3D - 473 646 IPR035897 -
Gabi3608g00016 1505 FunFam Disease resistance protein (TIR-NBS-LRR class) 475 645 - -
Gabi3608g00016 1505 Pfam NB-ARC domain 173 398 IPR002182 GO:0043531
Gabi3608g00016 1505 Pfam NB-ARC domain 660 879 IPR002182 GO:0043531
Gabi3608g00016 1505 SUPERFAMILY Toll/Interleukin receptor TIR domain 476 620 IPR035897 -
Gabi3608g00016 1505 ProSiteProfiles TIR domain profile. 1 115 IPR000157 GO:0007165
Gabi3608g00016 1505 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 115 IPR035897 -
Gabi3608g00016 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 409 IPR027417 -
Gabi3608g00016 1505 ProSiteProfiles TIR domain profile. 477 643 IPR000157 GO:0007165
Gabi3608g00016 1505 SUPERFAMILY "Winged helix" DNA-binding domain 389 469 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3608g00016 Gabi-Chr3608 257967 272407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3608g00016 23 468 WRKY Transcription Factor Family AT4G12020 26.386 1.72e-40 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3608g00016 - - pcin:129288830 1420.6