Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3605g00028 ATGGAGAATCCCCCAACCGGTTTTCGATTTTACCCAACAGAAGAAGAGCTAGTTGTTTTCTATCTACACAACCAGCTACAAGGCCAAACAAACGACATAAACAGAGTTATCCCAGTCATTGACATCAACGGCGTAGAGCCATGGCACCTTCCAACACTTGCAGGGGAGCTGTGTCATGGAGACAGAGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAAGCCAGGGGAGGCAGACCCAACAGAACCACACCTTGTGGATATTGGAAGGCCACGGGTTCTCCTGGCCACGTTTACTCTTCTGACAACACTATCATTGGGATTAAGAAAACCATGGTGTTTTACCAAGGGAAAGCTCCTAGCGGAACCAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTGATCACTCTCACCAATCCAATACAGCCCCTCCTAAGTTAAGGCACGAATTCAGCTTGTGTCGCATTTATGTCGTATCGGGAAGCTTTCGATCATTTGATCGACGGCCACTAGAGACTTCAAGAGAGTCACGAGTTGATGGGGACATAGGTGCCGCTTCAACAAGTGCTCAGCAAGCAGGGGTGGATGCATCAAGCTCGTCTGAAACTTGTCATTCAGGAGGAGGAGTTGAAGGGTCAAGTGGTACAAATTGTAATGAAAATAACGAGGCTGAAGAACCTCTTTGGGAATGGGAACAGCTTAATTGGCTCTAA 720 0.4667 MENPPTGFRFYPTEEELVVFYLHNQLQGQTNDINRVIPVIDINGVEPWHLPTLAGELCHGDREQWFFFSPRQEREARGGRPNRTTPCGYWKATGSPGHVYSSDNTIIGIKKTMVFYQGKAPSGTKTKWKMHEYKAIDHSHQSNTAPPKLRHEFSLCRIYVVSGSFRSFDRRPLETSRESRVDGDIGAASTSAQQAGVDASSSSETCHSGGGVEGSSGTNCNENNEAEEPLWEWEQLNWL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3605g00028 239 MobiDBLite consensus disorder prediction 172 229 - -
Gabi3605g00028 239 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Gabi3605g00028 239 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Gabi3605g00028 239 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Gabi3605g00028 239 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 187 - -
Gabi3605g00028 239 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Gabi3605g00028 239 MobiDBLite consensus disorder prediction 186 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3605g00028 Gabi-Chr3605 322658 324915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3605g00028 7 238 NAC Transcription Factor Family AT5G22380 59.322 1.49e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3605g00028 NAM 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3605g00028 - - gmx:100784960 393.275