Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3605g00015 ATGATGGAAGGAGTTTCCAGCGAAGCCCATATGTCAATTGCCGCTTCTTCCATGTTTCCTGGGTTTAGGTTCTGTCCCACCGACGAGGAGTTGATTTCTTATTACCTCAGAAAGAAGTTGGATGGTCATGAAGAGAGTGTTCAAGTCATTTCCGAGGTTGAGCTTTGTAAACATGAGCCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAGATAATGAGTGGTTCTTCTTCTCTCCCCGGGGAAGAAAGTATCCAAATGGTTCACAAAGTAAAAGAGCAACTGAATGTGGCTATTGGAAGGCCACTGGTAAAGAACGCAATGTAAAGTCAGGTTCTAACGTTATTGGTACAAAGCGTACTTTGGTATTCCACTTAGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTTTGCATGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTTGTTTGTCGCCTAAAGAGGAACACAGAGTTCCGTTTGAGCGATCCACAGAATAGAGCTTCTTCAAGTCAAGTGCACCCTGTGAATTCACGGGAAAGTGATTGTGCTATCTCAGAAGGTGGTATTGATCAAAGGGGTGCGTGTGAGCAAGAAAAAGAGGTTGGATGTAGCTCCAAGAGAAGCAGTAGCAGCTATGGTTCTCCTTCAATGGAACAAATTGATTCTATGTCTGAATCAAATCAACGACCAACTAATGAAGCTAATTTGACAGAATCTTCGGGTCAGGAAAAGGTGGATGAAGAGGATTGCTATGCTGAGATACTAAAGGATGATATCATTAAATTAGATGAATCATCAATCTCACAAGAGGCTAACACAAGACCACAGGACCCTACACAGATGCATGGTTACCAAGGCACAGCACAACGAAGAATAAGATTAAGGGTTGGGAATTCAAGACCTTCTACTGCAGGAGTTAGTTTCAAAAGCACAATGCACTCATCAAAGAATGCCTTCATTGCCAGAATGACCAACCGTTTGGTGATATTTGCTTTCATGGTTTCCACTTTGATAGCTATATATTTTTTGTCATCATTGGGTGGTCTCAAACAAGTTAAATGTTGTGGGAAATTTTCGCGTGTAAATCATGATTACATTCAGAAGAAAGAGAGGAGCTCGCACTTGTGTTCAGCTTGTAATTTAGGAATCATGTCGAGGCCCATGTTGCTTGTTTTCTTGCTGCTTATACTTATAATCACCTCACAGTTCGAGTGGAAGCAACAGCTTGTGGCTGATGTTGACTCAAATCCGAACTTATCTCAAAAGCAGCATCAGATTTCAAGGCCTGAAGAAACCGTAAAGGAGAAGATTATTTTAGTGCAAGAGAAGAATATTCGAAGACTGAATGAGCTTGTGCGGCATCTCCAAGAACAACTGCAGCAGTGTAGAAACAGAACTATAAATGGCACTGTAAGTCCTCTAGCTGATCGGATTCTTGAGCTTGAGCGACAGCAAATTTTAGAGGATTAA 1485 0.4189 MMEGVSSEAHMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKHEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWILHEYCINDKSQDSLVVCRLKRNTEFRLSDPQNRASSSQVHPVNSRESDCAISEGGIDQRGACEQEKEVGCSSKRSSSSYGSPSMEQIDSMSESNQRPTNEANLTESSGQEKVDEEDCYAEILKDDIIKLDESSISQEANTRPQDPTQMHGYQGTAQRRIRLRVGNSRPSTAGVSFKSTMHSSKNAFIARMTNRLVIFAFMVSTLIAIYFLSSLGGLKQVKCCGKFSRVNHDYIQKKERSSHLCSACNLGIMSRPMLLVFLLLILIITSQFEWKQQLVADVDSNPNLSQKQHQISRPEETVKEKIILVQEKNIRRLNELVRHLQEQLQQCRNRTINGTVSPLADRILELERQQILED 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3605g00015 494 MobiDBLite consensus disorder prediction 166 250 - -
Gabi3605g00015 494 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Gabi3605g00015 494 Gene3D NAC domain 27 165 IPR036093 GO:0003677|GO:0006355
Gabi3605g00015 494 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Gabi3605g00015 494 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 239 - -
Gabi3605g00015 494 MobiDBLite consensus disorder prediction 166 183 - -
Gabi3605g00015 494 SUPERFAMILY NAC domain 9 159 IPR036093 GO:0003677|GO:0006355
Gabi3605g00015 494 MobiDBLite consensus disorder prediction 209 244 - -
Gabi3605g00015 494 Coils Coil 443 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3605g00015 Gabi-Chr3605 235508 243243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3605g00015 5 285 NAC Transcription Factor Family AT2G27300 53.521 1.27e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3605g00015 NAM 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3605g00015 - - tpra:123896537 718.383