Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3605g00011 ATGCAATCCAAGAAGCCACGTCTCCCTTTCTCTTCCATGAAGCCAGCTTTTGCACCTTCCGGAGATTATCACCGATTCTCCCCCGACCACCACCCCCCTCCTCAAAACGACGCGGACAGCATTGTCGTTAATCCGCTTAAATTCAAGCGGAAGAGTGACACAGCTGATTATGGTGATAGAATGACTCCTGCCTCCACTGAAGCAGCTAATAGTCCTTTGCAGACGAGGAAGTCAAGCAAAGCCTCCAGACTTACAAAATGCAACGGATCTGAACCTCAAATTCCAGGCTCAAATATGGGGTCTCCTTCAGGAAATAATCTCTCTCCTGCTGGTCCAAGTCGTTATGACACCTCTTTAGGTATGTTGACAAAGAGGTTCATCAATTTGATCAAGCTAGCAAAGGATGGTATTCTTGATTTGAGAAAAGCTGCTGATATATTAGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTCAAGGGATTGGCCTTATAGAAAAGAACAGCAAAAACATAGTTCAATGGAAGGACCTGGATATTTCAAGACCAGAGGAAGCTGATGATAGTATTGCGAGTTTCCAGGCGGAAGTTGAAAATCTTACGATGGAGGAGAGCCAGTTAGATGAACAAATAAGAGAGATGGAAGAAAGACTAAGGGGTCTTAGGGAAGATGAAAACAGTCAAAAGTATCTTTTTGTGACTGAGGAAGATATAAAGAGCTTGCCCTGCTTTCAGAATGAAACCTTGATAGCAATTAAATCTCCACATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATGGTCCTGAGAAGCACTATGGGCCCAATAGATGTTCACCTTCTTAGTCAATTTGCAGAAAAGTTTGAGGAGATTAAAGGTGTTGACGTGACACCTAATCTTCCATCCAGTCCAGAGTTTAATAGGCATGGATCAACTGTGGTCTCAGAGGATAGAGGGAAGGACCTAGAAATACAGGAAGATGTTCATAGGCCTAGTTCAGATTTTCCTACTTCGCCGGACTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATTTTGATAGCAATACTGATTACTGGCTTTTATCTGATGCTGATGTTAACATATCAGACATGTGGAGAACGGAACCCGAAGTTGAATGGAATGATCTGGATACAATTCACGAAGATTATTGTCTGACTCATGTGAGCCCACCACCAACCCAAACTCCTTCGAACGCAAGTGAAGTGCCTTCAGCATCTAACCTTGCTGGAGATTGA 1299 0.4326 MQSKKPRLPFSSMKPAFAPSGDYHRFSPDHHPPPQNDADSIVVNPLKFKRKSDTADYGDRMTPASTEAANSPLQTRKSSKASRLTKCNGSEPQIPGSNMGSPSGNNLSPAGPSRYDTSLGMLTKRFINLIKLAKDGILDLRKAADILEVQKRRIYDITNVLQGIGLIEKNSKNIVQWKDLDISRPEEADDSIASFQAEVENLTMEESQLDEQIREMEERLRGLREDENSQKYLFVTEEDIKSLPCFQNETLIAIKSPHCTTLEVPDPDEAVDYPQRRYRMVLRSTMGPIDVHLLSQFAEKFEEIKGVDVTPNLPSSPEFNRHGSTVVSEDRGKDLEIQEDVHRPSSDFPTSPDFVSGIMKIVPSDFDSNTDYWLLSDADVNISDMWRTEPEVEWNDLDTIHEDYCLTHVSPPPTQTPSNASEVPSASNLAGD 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3605g00011 432 MobiDBLite consensus disorder prediction 1 111 - -
Gabi3605g00011 432 FunFam E2F transcription factor 1 108 181 - -
Gabi3605g00011 432 MobiDBLite consensus disorder prediction 408 432 - -
Gabi3605g00011 432 SUPERFAMILY "Winged helix" DNA-binding domain 114 177 IPR036390 -
Gabi3605g00011 432 Gene3D - 108 181 IPR036388 -
Gabi3605g00011 432 MobiDBLite consensus disorder prediction 64 111 - -
Gabi3605g00011 432 MobiDBLite consensus disorder prediction 324 343 - -
Gabi3605g00011 432 Gene3D - 186 296 - -
Gabi3605g00011 432 PANTHER TRANSCRIPTION FACTOR E2F 59 392 IPR015633 GO:0000978|GO:0006357
Gabi3605g00011 432 Pfam E2F/DP family winged-helix DNA-binding domain 116 178 IPR003316 GO:0005667|GO:0006355
Gabi3605g00011 432 SUPERFAMILY E2F-DP heterodimerization region 193 295 IPR037241 -
Gabi3605g00011 432 Pfam E2F transcription factor CC-MB domain 196 294 IPR032198 GO:0046983
Gabi3605g00011 432 MobiDBLite consensus disorder prediction 409 432 - -
Gabi3605g00011 432 CDD E2F_DD 190 296 IPR032198 GO:0046983
Gabi3605g00011 432 SMART E2F_TDP_2 114 179 IPR003316 GO:0005667|GO:0006355
Gabi3605g00011 432 MobiDBLite consensus disorder prediction 312 349 - -
Gabi3605g00011 432 Coils Coil 192 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3605g00011 Gabi-Chr3605 197422 203773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3605g00011 10 427 E2F-DP Transcription Factor Family AT5G22220 49.890 1.19e-130 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi3605g00011 E2F_CC-MB 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3605g00011 K06620 - gmx:100819817 586.645