Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3601g00001 ATGTTTACCTTCAACCCCTTTTCCTTGGAACTTTCTTCTCTGTTTGACTCATCATCGCCGGTGACCGGAAACTTTGGTGGGGTGGTATTTTCCGACGAGGAGGTGCTGCTGGCAGCAAGGAACCCGAAGAAGCGTGCAGGGAGGAAGAAGTACAAGGAGACTCGCCACCCTGTGTATTGGGGCGTGAGGAGGAGGAAATTAGATAAGTGGGTTTGTGAAGTGAGAGAGCCAAACAAGAAGACAAGGATTTGGCTAGGTACTTTTTCCACGGCGGAGATGGCGGCGCGTGCACACGACGTGGCCGCCATGGCTCTGAGGGGCAGGGATGCTTGTCTTAACTTTGCCGACTCTGCATGGCGGCTTCCTGTCCCTGCCACCGCCGAGGCTAAGGATATTCAGAGGACCGCGACAGAAGCAGCAGAGGCTTTCCGGCCACCGCGGAATGAGAGTGTTGAGGCGGTGGCAACCACGGAGACAGTGTTGGAGATGCCAGAGTTGTTGAGAAATATGGCGCTCATGTCCCCAACACATTCCTTGGAATTTGAGTATGAATATGCTGACGTGGAGGTTCAAGATGTTGAGGTGTCATTATGGAATTTTTCAATTTAA 609 0.5238 MFTFNPFSLELSSLFDSSSPVTGNFGGVVFSDEEVLLAARNPKKRAGRKKYKETRHPVYWGVRRRKLDKWVCEVREPNKKTRIWLGTFSTAEMAARAHDVAAMALRGRDACLNFADSAWRLPVPATAEAKDIQRTATEAAEAFRPPRNESVEAVATTETVLEMPELLRNMALMSPTHSLEFEYEYADVEVQDVEVSLWNFSI 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3601g00001 202 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Gabi3601g00001 202 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Gabi3601g00001 202 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 27 199 IPR045277 GO:0003700
Gabi3601g00001 202 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Gabi3601g00001 202 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Gabi3601g00001 202 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Gabi3601g00001 202 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Gabi3601g00001 202 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Gabi3601g00001 202 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Gabi3601g00001 202 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3601g00001 Gabi-Chr3601 12805 13413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3601g00001 1 200 AP2-EREBP Transcription Factor Family AT4G25480 49.778 4.72e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3601g00001 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3601g00001 - - gmx:547622 275.404