Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi35g00002 ATGGAAAAACACATCTACGCTTCTTACAGCCCTACCCACTACAGAGTCGGAGCACCATCTCCACCCAGATTCCGTGACCCTGATACCATGTTCCTCTCTCACTACCACCACCACCTCCACCGCTCCGACACCGCCGCCGCCACCGCCGCCGCTCTCCGCTATCCTTCTTCCGCCACCGCCGACGTCGATATTGGCCCGCCTGGGGTTGCTTCCAGAATCTCCTCTTCAACAACCTCCAACTTGTTCTCTCACGCTTCTTCCTGGCCTGCCGCCGTAGCCGCCGCCGCTGCCGCCGCAAATGTCGGCTCTGCTGCCCTTGACCTGAAACGCTCTTCTGAAGCGCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAATGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAACTGGAAGCAATTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGTTCAAAGTGAAACCCTTCCTGAGAGACCAGAAGAACCTGATTGTCCATTCTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAAGGTTTCCTCTGAAAATGCTGATGTTTCTGGCTTACCTGAGAGACCATTAGAGTCCCCTTGTGCGTTTTACATGAAAACTGGAAGATGTAAATTTGGTGCCTCATGTAAATTCCATCACCCCAAAGATATCCAGATTCAGTTGTCTGATGAACTGAGTCATACTGCTGAACAGACACAAACAAAATATATGATGGAGGGCATAATAGGAGATACACAACCAATTAAGCCTCTTATATCACCACTGTTGCAGAATAGCAAAGGGCTTCCTGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGAATGTAATTAATTCGCCGGTTTCTGCATTTGGCCCTTCTGTCTTGGCATCCTCGGCTGCTAATCTGAATATTGGAGTGATTAACCCAGCTGTATCTGTTTATCAAGCTTTAGACACAAGGTTGTCAAATCCAATGTCTCAGGTGGGAATAGCAGAAACTATCTATCCTCAGCGGCCTGGACAGATGGAATGCGATTACTATATGAAAACTGGCGTGTGTAAATTTGAGGAAAGATGCAAGTTCCATCACCCAATTGACCGCTCAGCACCATCACTGTCAAAACAGGCCTCACAACAAACTGTTAAACTCACTCCTGCAGGATTGCCTAGGAGAGAGGGTTCTGTGATCTGTCCATATTATTTGAAAACTGGCACTTGCAAATTCGGTGCCACCTGCAAGTTTGACCACCCTCCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGTAACATCTACAACCAATGGAGGGGAAGCAAAAGACCATGAATAG 1548 0.4709 MEKHIYASYSPTHYRVGAPSPPRFRDPDTMFLSHYHHHLHRSDTAAATAAALRYPSSATADVDIGPPGVASRISSSTTSNLFSHASSWPAAVAAAAAAANVGSAALDLKRSSEALYHPTILGTIGQNEAWYSTNSLAKRPRYETGSNLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPNVVQSETLPERPEEPDCPFFLKTQRCKFGSRCKFNHPKVSSENADVSGLPERPLESPCAFYMKTGRCKFGASCKFHHPKDIQIQLSDELSHTAEQTQTKYMMEGIIGDTQPIKPLISPLLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINSPVSAFGPSVLASSAANLNIGVINPAVSVYQALDTRLSNPMSQVGIAETIYPQRPGQMECDYYMKTGVCKFEERCKFHHPIDRSAPSLSKQASQQTVKLTPAGLPRREGSVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQVTSTTNGGEAKDHE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi35g00002 515 ProSiteProfiles Zinc finger C3H1-type profile. 463 491 IPR000571 GO:0046872
Gabi35g00002 515 SUPERFAMILY CCCH zinc finger 251 275 IPR036855 GO:0046872
Gabi35g00002 515 ProSiteProfiles Zinc finger C3H1-type profile. 324 352 IPR000571 GO:0046872
Gabi35g00002 515 FunFam Zinc finger CCCH domain-containing protein 37 192 239 - -
Gabi35g00002 515 Gene3D - 192 242 - -
Gabi35g00002 515 Gene3D - 112 191 - -
Gabi35g00002 515 SUPERFAMILY CCCH zinc finger 155 181 IPR036855 GO:0046872
Gabi35g00002 515 PANTHER PROTEIN PHOSPHATASE RELATED 313 370 - -
Gabi35g00002 515 SUPERFAMILY CCCH zinc finger 209 232 IPR036855 GO:0046872
Gabi35g00002 515 SUPERFAMILY CCCH zinc finger 411 438 IPR036855 GO:0046872
Gabi35g00002 515 Gene3D - 246 361 - -
Gabi35g00002 515 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Gabi35g00002 515 FunFam Zinc finger CCCH domain-containing protein 37 113 191 - -
Gabi35g00002 515 SUPERFAMILY CCCH zinc finger 328 352 IPR036855 GO:0046872
Gabi35g00002 515 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Gabi35g00002 515 FunFam Zinc finger CCCH domain-containing protein 37 309 357 - -
Gabi35g00002 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 274 IPR000571 GO:0046872
Gabi35g00002 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 180 IPR000571 GO:0046872
Gabi35g00002 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 233 IPR000571 GO:0046872
Gabi35g00002 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 350 IPR000571 GO:0046872
Gabi35g00002 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 415 436 IPR000571 GO:0046872
Gabi35g00002 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 466 490 IPR000571 GO:0046872
Gabi35g00002 515 FunFam zinc finger CCCH domain-containing protein 37 408 504 - -
Gabi35g00002 515 ProSiteProfiles Zinc finger C3H1-type profile. 154 182 IPR000571 GO:0046872
Gabi35g00002 515 Gene3D - 409 506 - -
Gabi35g00002 515 SUPERFAMILY CCCH zinc finger 466 490 IPR036855 GO:0046872
Gabi35g00002 515 ProSiteProfiles Zinc finger C3H1-type profile. 410 438 IPR000571 GO:0046872
Gabi35g00002 515 MobiDBLite consensus disorder prediction 438 457 - -
Gabi35g00002 515 SMART c3hfinal6 463 490 IPR000571 GO:0046872
Gabi35g00002 515 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Gabi35g00002 515 SMART c3hfinal6 154 181 IPR000571 GO:0046872
Gabi35g00002 515 SMART c3hfinal6 324 351 IPR000571 GO:0046872
Gabi35g00002 515 SMART c3hfinal6 206 233 IPR000571 GO:0046872
Gabi35g00002 515 SMART c3hfinal6 410 437 IPR000571 GO:0046872
Gabi35g00002 515 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi35g00002 Gabi-Chr35 12855 28162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi35g00002 322 491 C2H2 Transcription Factor Family AT3G02830 36.842 4.12e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi35g00002 zf-CCCH 1.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi35g00002 - - pvu:PHAVU_011G180700g 791.571