Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi359g00002 ATGGCAAAACCTGGGGTGTTGGAATCTGATCCAGGGGTGATGGTGAAGAAAACCTTAGAGTTGAAGAAGGAACTGCAGAGGCTGGTGAAGTCCATTGTTGATGATGAAGATTGCAGCACTGAAACCATTGATCAAGCCAAGGAAACTCTTTGTGTTCTCAAGGAGTTGAAGTTGAGACAGAGTTCATCACTGTCTTTGAAGCTGCATAAGACTGTGACTTGCCCAGATGAATTCAAATGTCCACTTTCCATGGATTTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAAACCTTTCATTCAAAAATGGCTGAATGCTGGAAATAGGACTTGCCCTCAAACTCATCAAGTCCTCTCACACACTGTCCTTACTCCAAATCACCTAATAAGGGAAATGATAGAAAAATGGTCTAAAAACCAAGGTACTGAATTGTCCAACACTGATCACTATATTAATGAGGAAGGCATAAATGAAGCAGATAGTGACCATTTTCTTTGTCTACTTAAGAAAATGTCTTCAGCACTTTCTGATCAGAAAGCAGCTGCAAAAGAACTCCGGTTGTTGACAAAGAAGCATCCTTGTTTCCGCGCACTTTTTTGTGATTCTGTAGATGCCATTCCCCAATTGCTTAAGCCAGTTTGTGGGAGTGATTCTTTTAGTAGCATTCACCCTGATCTACAAGAAGATGTAATCACAACACTCCTCAATATCTCAATTCATGACAGCAACAAGAAGCTAGTAGCTGAAACTCCAATGGTTATTCCACTCCTTATGAAAGCATTAGGATCCGGAACAATCGAAACAAGAAGCAATGCTGCTGCAACCCTTTTCACTTTGTCAGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGTGCCTTGAAGTCATTATTTGACCTTTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTTACCTTATGTGTCATGCATGAGAACAAGGCAAGAGCAGTTAAGGATGGTGCAGTGAGGGTGATTTTGACAAAGATAAAGAACCGAATTCATGTTGATGAATTACTAGCCATCCTTGCATTGCTTTCAACTCACCAAAAGGCTATTCAGGACATGGGAGAACTTGGTGCTGTTCCTAGCTTGCTAAGCATTATCAAAGAAAGTTCATGTGAACGCAACAAGGAGAATTGCATAGCAATCCTTCAAACTATTTGTCTGTATGATAGATCAAAGTTGAAGGAAATAAAGGAAGAGGAGAACACCAACAGAACAATCTCTGAGCTTGCACAGAATGGAACTTCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGACTTAACAGGGTTGTTAATATCACACACACTGCATAA 1377 0.4074 MAKPGVLESDPGVMVKKTLELKKELQRLVKSIVDDEDCSTETIDQAKETLCVLKELKLRQSSSLSLKLHKTVTCPDEFKCPLSMDLMRDPVIVASGQTYDKPFIQKWLNAGNRTCPQTHQVLSHTVLTPNHLIREMIEKWSKNQGTELSNTDHYINEEGINEADSDHFLCLLKKMSSALSDQKAAAKELRLLTKKHPCFRALFCDSVDAIPQLLKPVCGSDSFSSIHPDLQEDVITTLLNISIHDSNKKLVAETPMVIPLLMKALGSGTIETRSNAAATLFTLSALDSNKELIGKSGALKSLFDLLEEGHPLAMKDVASAIFTLCVMHENKARAVKDGAVRVILTKIKNRIHVDELLAILALLSTHQKAIQDMGELGAVPSLLSIIKESSCERNKENCIAILQTICLYDRSKLKEIKEEENTNRTISELAQNGTSRAKRKASGILERLNRVVNITHTA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi359g00002 458 SMART arm_5 194 243 IPR000225 GO:0005515
Gabi359g00002 458 SMART arm_5 286 326 IPR000225 GO:0005515
Gabi359g00002 458 SMART arm_5 366 407 IPR000225 GO:0005515
Gabi359g00002 458 SMART arm_5 244 285 IPR000225 GO:0005515
Gabi359g00002 458 Pfam U-box domain 75 144 IPR003613 GO:0004842|GO:0016567
Gabi359g00002 458 Gene3D - 156 453 IPR011989 -
Gabi359g00002 458 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Gabi359g00002 458 PANTHER U BOX DOMAIN-CONTAINING 22 448 - -
Gabi359g00002 458 SUPERFAMILY RING/U-box 72 146 - -
Gabi359g00002 458 CDD RING-Ubox_PUB 75 127 IPR045210 -
Gabi359g00002 458 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Gabi359g00002 458 FunFam RING-type E3 ubiquitin transferase 158 454 - -
Gabi359g00002 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 155 IPR013083 -
Gabi359g00002 458 FunFam RING-type E3 ubiquitin transferase 73 147 - -
Gabi359g00002 458 SUPERFAMILY ARM repeat 177 448 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi359g00002 Gabi-Chr359 37489 40547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi359g00002 136 458 U-box Gene Family AT3G07360 62.236 1.16e-129 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi359g00002 - - gmx:100777031 778.859