Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3599g00006 ATGGATGAGGTAAAGCATAAATCAAGGAAAGAAGATCATGAGGTGAAAGAAGGGGATTCTAAGAGGAGTCACCGTGATCGAGATCGTGATAAAACTGGAGAAAGAGTTAAGGGTGGAAACGATGGGAGGTACAGGGATAGGGAGAAGAGGGATCGTGAGTCTCGACGATATGAGAGAGAGAAGAGTAGTGATTCTGAAGACAGGTACAATAGAGATAGGGAGAAGCGCAAAGATAAAGATAAGGATAGAACACGAGTTCAGGATGTGGATAGAGAAAGAGCTCGGGACAAGAAAAGGGAAAGAGATAAGGAAGACAAGGAAAAGGAGAGGACAGACAGATTAAGGGAGAGGGAAAGGAAGGAGGATAAGGAGAGGACTAGAGAGAGAGAAAGGGAAAGGGAAAGGAGGGATCATGAGAAAGAGAAGGAAAAGGAAAGAGAAAAGGGGAGGAGAGTACGTGAGAGGGAGAAGCGTAGGGAAGTTGATAGTGAATACAGTGATGGTGAGCCTCGGGAGAGAGATAGGAAGCGGCATCGGAAAGAGGATGATAATGACAAGGGGCGAGAGAGGGAAAGAAGTGCCAGCAAGTCCAACAGGCAAACTGAGGAACATGAAGCAAGCCCAAGGAAAAAGAGTGGTGGAGATGACATAGATACCAAAGATGAAGAGATAAAACCTACACGTGAAGAGGAAATGGAGGATGAACAGAGGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAATGGCAAGAACTAAGGAGGAAGAGGGAAGAAGCAGAAAGAGAAAAGCAGGGTGAAGAAAGTGTTAATGAACTTGAGTCTGGAAAGACATGGACACTTGAAGGAGAATCTGATGATGAAGAAGGACCAGGTACTGGGAAGCAAGATACAGCTATCGATGTGGATGAAGAAGACAAACCTGCTGATAAGGAACCTAGCGATTTGATGGTGGTAGATGTTGATAATGGACCGGTTGCACCTGATTTAGAGGATGCAACTGCTGGTGCTCCTTTAGATGAGGAAATAGATCCATTAGATGCTTTCATGAATTCTATGATTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACTGCGTCACATTTTGATAACGCCTCTGAATTGAAGCCCAAGGATAAAGGGGATGAGCAAAGTCGTGGTGCACAGTCAAAGAAAGGTTCAAATAAATCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCGGATCTTGAAATTGAGGGGGATCCCGTAGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTATAGTTGACCACTCAAAGATCGACTATGAACCATTCAGGAAATTTTTTTATATTGAAGCGAAGGAGATCTCAAAGATGACTCCCGAAGAAGCTGCAGTATCCAGGAAGCAGTTGGAGTTGAAGGTACATGGAAAGGATGTTCCGAAGCCTGTAAAATCTTGGCACCAGACTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGTTGAACTATGAAAAGCCGATGCCTATTCAAGCACAGGCACTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGTACTGCTAAAACTGGTTCTGGCAAAACACTTGCTTTTGTTTTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTACAGGAGATGGTCCTATCGGACTTATTATGGCTCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTGCAAAGGTACTGGGACTCAGGTGTGTTCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACACCAGGTAGGATGATTGACATACTATGCACTAGTAGTGGAAAAATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACGAGAATTGTTCAGAATATTCGACCAGATCGTCAAACGGTTCTCTTCTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTCTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGAAAATCAGAGGTTCCTTAGACTCTTAGAAATATTAGGGGAGTGGTATGAGAAAGGAAAGATTTTGATGTTTGTCCACTCACAGGAGAAATGTGATCTTTTGTTTAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGTCGCACTGGCCGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTGTCTGAGCAGGTTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAACGAGGAGGAAGATGAGGTGAGTAGAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCGGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGACATCTCACAGCATCCTGCTCTTGCTCAGATTCTTGCCGCCACGAAAGTGAATTCTCCTGCAGTGCCTACTCCCAGCTCTGCTGGCCAGCTGATTTCAAATGGCGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGAATGCCACAGTCATGCCTGGGACAGGGCTACCCCTTGCTGCAAATGACGGGGCAGCTCGAGCAGCATTAGCTGCTATAAACCTGCAGCACAACTTAGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATTAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCTGACTGGACCGGAGCTGCCATTACCACCAGGGGGCAGTATTACCCACCTGGCAAAATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAGGGTCCCAGTGAGCAGTCTGTTAAGAGAGCTAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCCGGTGGAACTCAACCAGGCAAATACTCCGTTGTATAA 3408 0.4445 MDEVKHKSRKEDHEVKEGDSKRSHRDRDRDKTGERVKGGNDGRYRDREKRDRESRRYEREKSSDSEDRYNRDREKRKDKDKDRTRVQDVDRERARDKKRERDKEDKEKERTDRLRERERKEDKERTRERERERERRDHEKEKEKEREKGRRVREREKRREVDSEYSDGEPRERDRKRHRKEDDNDKGRERERSASKSNRQTEEHEASPRKKSGGDDIDTKDEEIKPTREEEMEDEQRRLDEEMEKRRRRVQEWQELRRKREEAEREKQGEESVNELESGKTWTLEGESDDEEGPGTGKQDTAIDVDEEDKPADKEPSDLMVVDVDNGPVAPDLEDATAGAPLDEEIDPLDAFMNSMILPEVEKLNNAVTASHFDNASELKPKDKGDEQSRGAQSKKGSNKSIGRIIPGEESDSDYADLEIEGDPVDEDDDEFMKRVKKTKAEKLSIVDHSKIDYEPFRKFFYIEAKEISKMTPEEAAVSRKQLELKVHGKDVPKPVKSWHQTGLTSKILETIKKLNYEKPMPIQAQALPVIMSGRDCIGTAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENQRFLRLLEILGEWYEKGKILMFVHSQEKCDLLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVSRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNSPAVPTPSSAGQLISNGGLPVSLPAVLGLQNATVMPGTGLPLAANDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQYYPPGKIPGPGERKLYLFIEGPSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 1 340 - -
Gabi3599g00006 1135 Coils Coil 229 273 - -
Gabi3599g00006 1135 Pfam DEAD/DEAH box helicase 522 693 IPR011545 GO:0003676|GO:0005524
Gabi3599g00006 1135 CDD DEADc_DDX46 486 707 - -
Gabi3599g00006 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 708 IPR027417 -
Gabi3599g00006 1135 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 497 525 IPR014014 GO:0003724
Gabi3599g00006 1135 SMART ultradead3 516 721 IPR014001 -
Gabi3599g00006 1135 Gene3D - 449 706 IPR027417 -
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 1 274 - -
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 376 393 - -
Gabi3599g00006 1135 FunFam probable ATP-dependent RNA helicase DDX17 459 709 - -
Gabi3599g00006 1135 PANTHER RNA HELICASE 445 917 - -
Gabi3599g00006 1135 Pfam Helicase conserved C-terminal domain 732 839 IPR001650 -
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 913 927 - -
Gabi3599g00006 1135 Coils Coil 97 155 - -
Gabi3599g00006 1135 CDD KH-I_AtRH42_like 1033 1134 - -
Gabi3599g00006 1135 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 652 660 IPR000629 -
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 372 427 - -
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 412 427 - -
Gabi3599g00006 1135 SMART helicmild6 758 839 IPR001650 -
Gabi3599g00006 1135 Gene3D - 707 881 IPR027417 -
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 913 945 - -
Gabi3599g00006 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 879 IPR027417 -
Gabi3599g00006 1135 CDD SF2_C_DEAD 718 848 - -
Gabi3599g00006 1135 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 706 IPR014001 -
Gabi3599g00006 1135 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 717 878 IPR001650 -
Gabi3599g00006 1135 MobiDBLite consensus disorder prediction 282 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3599g00006 Gabi-Chr3599 36401 41689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3599g00006 495 859 Eukaryotic Initiation Factors Gene Family AT3G19760 32.249 3.49e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3599g00006 K12811 - gmx:100784306 1660.58