LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3598g00001	ATGCACGGCGGCGATAACGACGACAACAACAATCAGCTCCACCTTCGCGGCAGCAACGGAGACACCTTGGACCTCCGAAACCTCAAGGTGATCTCCGCCGTGGGACGCGGCGCCAAGGGCGTGGTGTTCCTGGCGAGAACCTACGACGCGTCGAACGGGAAATGGCTGGCCCTGAAGGTGATATCCAAAGACCTACTTCAGAAGAAGAATAACGGCGAGTGCAAGAGGGTCTCGTTCGAACAGCATATACTACGTCGTTTCGATCACCCGCTCTTGCCGCGGTTGCGAGGGGTTTTCGAGACCGAGAAACTCATTGGGTTCGCCATCGATTATTGCCATGGTGGGAATCTGCATTCCCTCCGGAAGAGGCAATCTGAGAAGATGTTCTCTGAAGAAGCTATAAGGTTTTACGCTGTGGAATTGGTGCTGGCATTGGAGTACTTGCACAATTTTGGAGTGGTTTACAGGGATTTGAAGCCGGAGAACATCATGATTCAAGAAACGGGTCACATAATGCTCGTGGATTTCGACCTTTCCAAGAAGCTGAACCCAAAGTCACCGAACTCGCTGAGTTGCAACTCGTCCCCGGGTTCTGACTCGGTAGCGGAGAAGGACCGGAATAAGCGACGGTTCTCGCGGTTCTACTGTTACTGTCAGTCGGGGATATCGCCGAACGACTCGGAGAGTCAAGTTGACACCAACTCGGCGCGTAGGAGCGAGTCGGACTCGGTGGAGAAGTCCAACTCGTTCGTCGGAACGGAGGATTACGTGGCACCAGAGGTTATTTTGGGCGAGGGACACAACTTCGGGGTTGATTGGTGGTCATTCGGCGTCGTTTTATATGAGATGCTCTACGGGACGACGCCGTTCAAGGGAGCAAATAGGAAAGAGACGTTTTGCCGGATTTTAACCAGGGAACCTGATCTGACGGGCAAAACGACGCCGTTGAGGGACCTGATTAAGAAGTTGCTTGTGAAAGATCCTGACCGTAGGATCGAGGTTGAAGAAATCAAGAGGCACGATTTCTTTAGAGGTGCGAATTGGGACACGGTTTTGCAAATTACGCGTCCACCGTATATTCCTCAGAATGACGTTGAGGACAAAGTGGGGTTTTCCAGAAAAGATGTAGAGTGCTTTGTCCATAAAATATTTTTCCCAGACAACAATGGCACGGAAGAGAAAAGTAATGAGCTGGGGAAAAAAGATGGGAATGAGAAAAGTGACAATAATAATAAGAATGCGTGGGTTGACAAGCATGAAGATAAGCAGTTTGGGAAGTTCTTAGGTTTGCTGAAACAACTCTATATAAATATACCTCTTGTTGAAGCACTGGAACTGTGCCTTCCACAAAGGTTGAAAAAGCAAGATGAAGATAAGCAGTTTGGGAAGTTCTTAGGAAGATTGAAGAGTTTGACTGTAGCACTAACTAAAGAATCATGCAAGTACTTAACTAAAATCCCACCAAAGTTGAAAGAGCTAGGGATTTTCACACTTCCTTTCACTATTGGGAAGACATACCAAGGAAGAGCACTTTGTGACTTAGGTTTGAGTGTGAACTTAATGCCAACTTCCATCTTTAAGCAACAAGCAAGACCAACCACAATTACTCTCCAACTTGCTGATCGGTCTATTGCTAAACCGGAAGGTAAAATTGAGGATGTTCTTGTCCAAGTATAG	1677	0.4764	MHGGDNDDNNNQLHLRGSNGDTLDLRNLKVISAVGRGAKGVVFLARTYDASNGKWLALKVISKDLLQKKNNGECKRVSFEQHILRRFDHPLLPRLRGVFETEKLIGFAIDYCHGGNLHSLRKRQSEKMFSEEAIRFYAVELVLALEYLHNFGVVYRDLKPENIMIQETGHIMLVDFDLSKKLNPKSPNSLSCNSSPGSDSVAEKDRNKRRFSRFYCYCQSGISPNDSESQVDTNSARRSESDSVEKSNSFVGTEDYVAPEVILGEGHNFGVDWWSFGVVLYEMLYGTTPFKGANRKETFCRILTREPDLTGKTTPLRDLIKKLLVKDPDRRIEVEEIKRHDFFRGANWDTVLQITRPPYIPQNDVEDKVGFSRKDVECFVHKIFFPDNNGTEEKSNELGKKDGNEKSDNNNKNAWVDKHEDKQFGKFLGLLKQLYINIPLVEALELCLPQRLKKQDEDKQFGKFLGRLKSLTVALTKESCKYLTKIPPKLKELGIFTLPFTIGKTYQGRALCDLGLSVNLMPTSIFKQQARPTTITLQLADRSIAKPEGKIEDVLVQV	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3598g00001	558	SUPERFAMILY	Protein kinase-like (PK-like)	27	365	IPR011009	-
	Gabi3598g00001	558	FunFam	Serine/threonine-protein kinase OXI1	245	362	-	-
	Gabi3598g00001	558	ProSiteProfiles	Protein kinase domain profile.	28	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3598g00001	558	Gene3D	Acid Proteases	475	558	IPR021109	-
	Gabi3598g00001	558	SMART	serkin_6	28	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3598g00001	558	Gene3D	Phosphorylase Kinase; domain 1	28	115	-	-
	Gabi3598g00001	558	PANTHER	FLIPPASE KINASE 1-RELATED	14	368	-	-
	Gabi3598g00001	558	MobiDBLite	consensus disorder prediction	224	247	-	-
	Gabi3598g00001	558	Pfam	Protein kinase domain	244	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3598g00001	558	Pfam	Protein kinase domain	30	189	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3598g00001	558	FunFam	Serine/threonine-protein kinase OXI1	116	184	-	-
	Gabi3598g00001	558	MobiDBLite	consensus disorder prediction	393	415	-	-
	Gabi3598g00001	558	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	153	165	IPR008271	GO:0004672\|GO:0006468
	Gabi3598g00001	558	Gene3D	Transferase(Phosphotransferase) domain 1	232	362	-	-
	Gabi3598g00001	558	Gene3D	Transferase(Phosphotransferase) domain 1	116	187	-	-
	Gabi3598g00001	558	MobiDBLite	consensus disorder prediction	391	415	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3598g00001	Gabi-Chr3598	18557	23534	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3598g00001	22	416	AGC Kinase Gene Family	AT3G25250	57.178	6.75e-149	432

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Gabi3598g00001		Pkinase	2.7e-35	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3598g00001	K20714		-	gmx:100813693	595.119