LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3595g00034	ATGAAGCAAGGTAAAGATATGATGTTCAGAGCAGATAAAATTGATCTGAAGAGTTTGGATGCCGAGCTAGAAAAGCACTTGAGCAGGGTTTTGTCCAGAAGCATTGAGGCTAAAAGGCCCAAAGAAGAGTGGGAGATTGATTCAGCCAAATTGGATATACGATATGTTGTAGCTAATGGGGCCTATGGTACTGTCTACAGGGGCACTTATGACGGTCAAGATGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTTGCCTCTGCTACTGAAACTGCTGCTTTACGAGCATCATTTCAGCAGGAGGTTACTGTCTGGCGGAATCTTGATCATCCGAATGTCACAAAATTTATTGGAGCTTCAATGGCCACTTCAAATCCTAAGATTCCCTTAAAAGCTGGTCGTCAAGATTCCCTTCCTTCCAAGGCATGTTGTGTTGTTGTTGAGTATGTACCCTGTGGGACACTAAAACAATACTTGTTCAAAAATAGGCGGAAAAAACTTGCATATAAAGTTGTGATTCAGCTGGCGTTGGACCTCTCTAGAGGTCTTAGTTATCTACATTCGAAGAAAATTGTTCATCGTGATGTAAAATCTGAAAATATATTGTTAGATGCCAATCAAAATTTGAAAATTGCTGATTTTGGTGTTGCTCGGGTTGAAGCTATAAATCCAAATGAGATGACGGGTGAAACTGGAACCATTGGATATATGGCACCAGAGGTTCTAGATGGTAAGCCTTACAACAGAAGATGTGATGTATACAGCTTTGGCATTTGCTTGTGGGAAATCTATTGCTGCGATATGCCTTATCCAAATCTAAGCTTTGCTGATGCGTCATATGCGGTTGCTCATCGGAATTTACGACCAAAGATTCCTAAATGTTGTCCAAATGCCTTAGCAAACATAATGCGAAAATGCTGGGATGGGAAACCAGAGAGTCGTCCAGAAATGCATGAGGTGGTGAGAATGTTAGAAGCAATTGATACGAGCAAAGGAGGTGGAATGATACCCGAAGATCAGACTCCATTTTGTTTTTGCTTTGTACCTCTTCGTGGTCCCTAA	1068	0.4176	MKQGKDMMFRADKIDLKSLDAELEKHLSRVLSRSIEAKRPKEEWEIDSAKLDIRYVVANGAYGTVYRGTYDGQDVAVKVLDWGEDGVASATETAALRASFQQEVTVWRNLDHPNVTKFIGASMATSNPKIPLKAGRQDSLPSKACCVVVEYVPCGTLKQYLFKNRRKKLAYKVVIQLALDLSRGLSYLHSKKIVHRDVKSENILLDANQNLKIADFGVARVEAINPNEMTGETGTIGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPNLSFADASYAVAHRNLRPKIPKCCPNALANIMRKCWDGKPESRPEMHEVVRMLEAIDTSKGGGMIPEDQTPFCFCFVPLRGP	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3595g00034	355	Pfam	Protein tyrosine and serine/threonine kinase	55	326	IPR001245	GO:0004672\|GO:0006468
	Gabi3595g00034	355	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	42	330	-	-
	Gabi3595g00034	355	Gene3D	Phosphorylase Kinase; domain 1	40	132	-	-
	Gabi3595g00034	355	CDD	STKc_MAP3K-like	60	326	-	-
	Gabi3595g00034	355	ProSiteProfiles	Protein kinase domain profile.	51	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3595g00034	355	Gene3D	Transferase(Phosphotransferase) domain 1	154	337	-	-
	Gabi3595g00034	355	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	193	205	IPR008271	GO:0004672\|GO:0006468
	Gabi3595g00034	355	PRINTS	Tyrosine kinase catalytic domain signature	253	275	IPR001245	GO:0004672\|GO:0006468
	Gabi3595g00034	355	PRINTS	Tyrosine kinase catalytic domain signature	149	162	IPR001245	GO:0004672\|GO:0006468
	Gabi3595g00034	355	PRINTS	Tyrosine kinase catalytic domain signature	187	205	IPR001245	GO:0004672\|GO:0006468
	Gabi3595g00034	355	PRINTS	Tyrosine kinase catalytic domain signature	297	319	IPR001245	GO:0004672\|GO:0006468
	Gabi3595g00034	355	SMART	serkin_6	51	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3595g00034	355	FunFam	Kinase suppressor of Ras 1	40	134	-	-
	Gabi3595g00034	355	PIRSF	ILK	20	335	-	-
	Gabi3595g00034	355	SUPERFAMILY	Protein kinase-like (PK-like)	35	326	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3595g00034	Gabi-Chr3595	272536	283052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3595g00034	5	355	MAP Kinase Kinase Kinase	AT3G22750	76.705	0.0	581

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Gabi3595g00034		PK_Tyr_Ser-Thr	9.6e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3595g00034	-		-	gmx:100803917	602.053