Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3595g00029 ATGTGTACACGGAATAAGAAAGAAACAACTAATACTTTGATGCTCGTGGTTTCCCTCCTTATCATTCTAATCTCGATTAATCCCTCACACCAATCTGAACACTCATCCCCTCTCTCCCAACTAAATCCAAGGCTCTCCAAAGCTTACACAGCTCTCCAAGCATGGAAACACTCAATCACTTCTGACCCCAAGAACTTCACCTCCAATTGGTGTGGCCCTTATGTTTGCAACTACACTGGCATCTACTGTGCACCAGCCCCAGATGATTCACACATCCTTACAGTTGCTGGAATAGACCTAAACCATGGCAACATAGCTGGATCATTGCCAGAGGAACTTGGCCTCTTAACTGATCTAGCCCTTTTCCACATAAACTCCAATCGCTTCTGTGGTTCCCTCCCAAATAGCTTTAGCTACCTTCACCTTCTCCATGAGCTAGATATCAGCAACAACCAATTCTCAGGAACATTTCCTGAGGTTGTTCTTTGCCTCTCTTCACTAAAATTCTTGGATATCAGATTCAATGGGTTTCAAGGCAAAGTTCCTTCGAGCCTTTTCAACCTTAAACTCGATGCCCTTTTCATCAACAACAACAAATTTCAATTCTCTTTGCCTGAAAACTTTGGGAACATTCCTGCCTCTGTGGTTGTGTTTGCAAACAATGACCTCAGGGGTTGTATTCCATCAAGTTTGGCCAAAATGAAGGATACCCTTAACGAGATTATCATAATGAATAGTGGTATAAATGGTTGTTTGCCACCGGAAATAGGGAATTTGGACAAAGTCAGAGTGTTTGATGTGAGCATGAACAATCTGGTTGGAGAATTGCCTGAATCCATGGGAAGAATGAAGAGTTTGGAACAGTTAAATGTGGCGCATAACATGTTGTCTGGCACGATTCCAGAGAGTATATGCACACTGCCAAGGTTGGAGAACTTCACGTATTCATACAACTACTTCTGCACTGAATCACCATTGTGTCTCAAGTTGCCAGATAAGGATGATCGAAAGAATTGTATTCCTTATAGGCCATTGCAAAGGTCAACTCACGATTGTGCAGCTTTTTATGCTCATCCTGTTGATTGTACTTCGTTTGGTTGCTCCTTTAGAACTGCATCACCACCTCCACCTCCTCCTCCACCACCTCCTCCTCCACCTCCACCCCCGCCGCCACCACCACCTCCGCCTCCACCTCCGCCACCACCGCCTCCACCTCCGCCACCACCACCACCTCCTCCTCCGGCAGCTTACTACCACTATCTCTGA 1266 0.4542 MCTRNKKETTNTLMLVVSLLIILISINPSHQSEHSSPLSQLNPRLSKAYTALQAWKHSITSDPKNFTSNWCGPYVCNYTGIYCAPAPDDSHILTVAGIDLNHGNIAGSLPEELGLLTDLALFHINSNRFCGSLPNSFSYLHLLHELDISNNQFSGTFPEVVLCLSSLKFLDIRFNGFQGKVPSSLFNLKLDALFINNNKFQFSLPENFGNIPASVVVFANNDLRGCIPSSLAKMKDTLNEIIIMNSGINGCLPPEIGNLDKVRVFDVSMNNLVGELPESMGRMKSLEQLNVAHNMLSGTIPESICTLPRLENFTYSYNYFCTESPLCLKLPDKDDRKNCIPYRPLQRSTHDCAAFYAHPVDCTSFGCSFRTASPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAAYYHYL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3595g00029 421 FunFam Leucine-rich repeat extensin-like protein 1 49 210 - -
Gabi3595g00029 421 SUPERFAMILY L domain-like 48 329 - -
Gabi3595g00029 421 Pfam Leucine rich repeat N-terminal domain 49 83 IPR013210 -
Gabi3595g00029 421 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 413 - -
Gabi3595g00029 421 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 235 323 - -
Gabi3595g00029 421 MobiDBLite consensus disorder prediction 371 411 - -
Gabi3595g00029 421 Gene3D Ribonuclease Inhibitor 216 330 IPR032675 -
Gabi3595g00029 421 Gene3D Ribonuclease Inhibitor 46 215 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3595g00029 Gabi-Chr3595 198823 200640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3595g00029 42 378 Leucine-rich Repeat extension Gene Families AT3G22800 69.231 1.85e-162 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3595g00029 - - gmx:100813811 580.096