Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3595g00027 ATGGCTGGTAGGCTACCTGGTGTTGGGTTGCCTCCAAGGAAGAGATCAGAGAATCACCATAGATATGAACACCATGCTACCTACCGAGACTCCTACCTAAGGGAATCATTGGAGTCACCATGGATTTCACTTAGTGCCTTAGATGAAACTGCTCTCAGGGCTAGGCAACGCCTGCAGAAGAAGCTTGGACACTTCTTTTCCTCCTCCAGGTCAAGTGACAGTAAAAAAAAGGATGGAAAAATAAGCCAAAGAACCTTCAAGATTAAGGATGCATGTTTAGGTCGGAAGTTATTAGACTGCTCATGGTTAATATTACGGCCCAACAGGTTTAAGAAAGAGAGAAAAGTTTGTGCTGTTTGCCTAGAAGATTTCCAGCAAGAGCAGCAAGTTATGAACCTCAATTGCTCCCATAAGTACCATTCAGCATGTCTTCTCCCCTGGCTTGCAGACCATCCCCATTGTCCCTGTTGTCGAACCCCAGTTGTGCCCTGA 492 0.4573 MAGRLPGVGLPPRKRSENHHRYEHHATYRDSYLRESLESPWISLSALDETALRARQRLQKKLGHFFSSSRSSDSKKKDGKISQRTFKIKDACLGRKLLDCSWLILRPNRFKKERKVCAVCLEDFQQEQQVMNLNCSHKYHSACLLPWLADHPHCPCCRTPVVP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3595g00027 163 CDD RING-H2_PA-TM-RING 116 158 - -
Gabi3595g00027 163 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 45 159 - -
Gabi3595g00027 163 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3595g00027 163 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Gabi3595g00027 163 SMART ring_2 117 157 IPR001841 -
Gabi3595g00027 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 163 IPR013083 -
Gabi3595g00027 163 SUPERFAMILY RING/U-box 107 162 - -
Gabi3595g00027 163 Pfam Ring finger domain 116 158 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3595g00027 116 158 C3H Transcription Factor Family AT3G60080 55.814 6.45e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3595g00027 - - gmx:100527548 233.802