Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3595g00017 ATGAACGGCGGCGGCACCGCCACCTTCCGATCCATCCTCGACAAACCCCTCAACCAGCTCACCGAGGATGACATTTCCCAACTCACCCGCGAAGACTGTCGTAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAGCAGGTCATTTCCCTCAAAGCTCTGCTCGAACCTGCCGACGACGATTCCCCTGCAACCGCCACCGCCACGCACCACCACGACCATGCCTCTCAGGGGAATTTGAATGAAGCTCCGGCGGCGAAAGTCCTGGCTGCTGAAGAGCCCGGTATTCATGTCGCGGAGGAGCTTCAGAAATCTGGGTCGTCTGGGGAAAAACCTACGGAAACGAATGATACCAACGTTGTTAGCCCCAGAGGGTGTGCAACTAGCGGGTCAGGTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGACGGAGTCTCACCTGAAAAGGCACGAACAATCATGCAGCTTGCAGCGAGTCCAGTCCAATTTCCTCAGGATGATCCTTTAAGTAAAAATGGAGCTGTTTGGACTTCTTTTTGCCACTTACCAACGGATAATGTCCTCATCCCTAGTGATACAACAATCCTTCAGGTTGCTCAAGCAGATAAGATGGTGGAATATCCTCTGCAGTACAGGGAGAAAGGGAGCAAAGCTCGCGATGCAGAGGGTCAGGCAAGCAGAAAAGTGTCATTGCAGCGATATCGTGAAAAGAAAAAAGACAGGGGACGATTGAAGGGCAGGAAATTGACTGGGATAAATTCATCTAACTTAGAGATGTATTTGAATCTTCCAGTGAAGGTCAATGCCTTGAATGGGAATTCAAGCCGTAGTAGCACTAGCTCTCCACCACAGCCTAGACTTCCTCTAGTTTCAAGTGGCTCAGCTGACAACCAGTTAAAAGTTTCCCTTCCCATTGATCTCAATGACAAAGATGTTCAAGAATGCTAA 984 0.4959 MNGGGTATFRSILDKPLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPADDDSPATATATHHHDHASQGNLNEAPAAKVLAAEEPGIHVAEELQKSGSSGEKPTETNDTNVVSPRGCATSGSGGQMTIFYCGKVNVYDGVSPEKARTIMQLAASPVQFPQDDPLSKNGAVWTSFCHLPTDNVLIPSDTTILQVAQADKMVEYPLQYREKGSKARDAEGQASRKVSLQRYREKKKDRGRLKGRKLTGINSSNLEMYLNLPVKVNALNGNSSRSSTSSPPQPRLPLVSSGSADNQLKVSLPIDLNDKDVQEC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3595g00017 327 ProSiteProfiles Tify domain profile. 136 171 IPR010399 -
Gabi3595g00017 327 SMART tify_2 136 171 IPR010399 -
Gabi3595g00017 327 MobiDBLite consensus disorder prediction 225 249 - -
Gabi3595g00017 327 MobiDBLite consensus disorder prediction 283 327 - -
Gabi3595g00017 327 MobiDBLite consensus disorder prediction 67 87 - -
Gabi3595g00017 327 MobiDBLite consensus disorder prediction 110 137 - -
Gabi3595g00017 327 MobiDBLite consensus disorder prediction 225 256 - -
Gabi3595g00017 327 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 266 IPR040390 -
Gabi3595g00017 327 MobiDBLite consensus disorder prediction 114 137 - -
Gabi3595g00017 327 MobiDBLite consensus disorder prediction 283 313 - -
Gabi3595g00017 327 Pfam tify domain 140 170 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3595g00017 Gabi-Chr3595 89589 95273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3595g00017 5 281 Tify Gene Family AT4G14720 46.823 7.86e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi3595g00017 tify 9.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3595g00017 - - gmx:100813937 468.388