Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3595g00009 ATGAATAATCCTCAGGGTCAAGTGAAGGAGGAGTTTCTTGGAGAAAGTTTTTCATCCTTTTCTGGTGACCAGAAACCAAATATGGTTACTCCCCAACCAATTGAGGGGCTTCATGAAAATGGTCCTCCACCATTCCTCACAAAAACATATGACATAGTTGATGACCCTTCCACTAATCATATAGTTTCATGGAGCATAGGGAACAACAGCTTTGTTGTGTGGGATCCACAGGCCTTTTCCATAAGCCTTCTCCCAAGATTCTTCAAACACAACAATTTCTCCAGTTTTGTTAGGCAACTTAACACCTATGGGTTTAAAAAGGTTGATCCAGATAAGTGGGAGTTTGCTAATGAGAGGTTTCTTAGAGGACAAAGGATTCTTTTGAAGAACATTAGAAGGAGGAAAGCAAATCAACCTCAGGCACTATTAGAGCAAGTTCCAGACCCTTGTGTTGTTGAGGTAGGGCATTTTGGATTAGATGGAGAAGTTGATCGTTTGAGGCGTGACAAACAAGTTCTCATGGTGGAGTTGGTGAAACTCAGACAAGAGCAGAAGAATACAAGAGTTCAACTTCATGAAATGGAAGGAAGGCTTAAAAGGACAGAACAGAAGCAGCAACAGATGATGAACTTCTTGGCAAGGGCAATGCAGAATCCTAACTTCATGCAACAATTAGTTCACCAAAAAGAATGGAGAAAAGAGCTTGAGGAAGCGTTTTCCAAGAAGAGGAGGCGACCTATTGATCAAGGGCCTAGTAATGTTGAAATAGGTGAATTGGGCTTTGTTGAAGATTGCTCAGTTGAGGTATCAGATCTGGACCTTGCTTTGAATATGGAGGGACAAAGTGGAAGCCAAAAGGACTTAGAGGAAGATCGTTTTCAACTTGAAAGTAGAGACAAAGACATTGATGAGGTGTTTTGGCAAGATTTGTTTAATGAGGGTGTTGAAGATCAAGATGTGCTAGGTTTTGAAGATGTAGATGATTTGGTTGAGCAACTTGATTATTTGGCCTCTAGTCCTAAATAG 1026 0.4084 MNNPQGQVKEEFLGESFSSFSGDQKPNMVTPQPIEGLHENGPPPFLTKTYDIVDDPSTNHIVSWSIGNNSFVVWDPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANERFLRGQRILLKNIRRRKANQPQALLEQVPDPCVVEVGHFGLDGEVDRLRRDKQVLMVELVKLRQEQKNTRVQLHEMEGRLKRTEQKQQQMMNFLARAMQNPNFMQQLVHQKEWRKELEEAFSKKRRRPIDQGPSNVEIGELGFVEDCSVEVSDLDLALNMEGQSGSQKDLEEDRFQLESRDKDIDEVFWQDLFNEGVEDQDVLGFEDVDDLVEQLDYLASSPK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3595g00009 341 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3595g00009 341 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3595g00009 341 FunFam Heat shock transcription factor 1 38 135 - -
Gabi3595g00009 341 Gene3D - 37 135 IPR036388 -
Gabi3595g00009 341 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3595g00009 341 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3595g00009 341 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3595g00009 341 SUPERFAMILY "Winged helix" DNA-binding domain 40 134 IPR036390 -
Gabi3595g00009 341 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3595g00009 341 Coils Coil 163 204 - -
Gabi3595g00009 341 MobiDBLite consensus disorder prediction 17 41 - -
Gabi3595g00009 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 253 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3595g00009 Gabi-Chr3595 58888 60501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3595g00009 28 339 HSF AT3G22830 54.596 8.15e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3595g00009 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3595g00009 K09419 - gmx:100809515 500.745