Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3595g00007 ATGGCTGTTGGCAAGAACAAGCGGATCTCGAAGGGGAAGAAAGGTGGCAAGAAAAAGGCTGCTGATCCGTTTTCCAAGAAGGACTGGTACGACATAAAAGCTCCTTCAGTGTTTCAGGTCAAAAACGTTGGAAAGACACTTGTCACCCGTACTCAGGGTACCAAAATTGCTTCAGAAGGACTCAAACATCGAGTGTTTGAGGTATCTTTGGCTGATCTTCAAGGGGACGAGGACCACTCCTTCAAAAAGATCAGGTTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTCTTACAAATTTCTGGGGAATGGATTTCACCACTGACAAGCTGAGATCATTGGTGCGAAAGTGGCAAACCCTGATTGAGGCCCATGTCGATGTGAAAACCACTGACAACTACACATTGAGGATGTTCTGCATTGGATTTACCAAGAGGAGAAGTAATCAGGTGAAGAGAACCTGTTATGCACAGTCAAGCCAGATTAGACAGATCCGTAGGAAGATGCGCGAGATAATGATCAACCAGGCAACATCCTGTGATTTGAAGGAACTTGTCCGCAAGTTTTTTCCTGAGATGATTGGAAAAGAAATTGAGAAAGCTACATCGAGTATCTATCCTCTGCAGAATGTTTTCATTCGAAAAGTCAAGATCCTTAAAGCTCCAAAGTTTGATCTTGGAAAATTGATGGAGGTCCATGGGGATTACTCCGAAGATGTTGGTACTAAGGTTGACAGACCCGCTGATGAAACAATGGCACCAGAGGGAACCACCGAAGTTGTTGGAGCTTAA 789 0.4436 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHSFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDLKELVRKFFPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETMAPEGTTEVVGA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3595g00007 262 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3595g00007 262 Hamap 40S ribosomal protein S1 [RPS3A]. 1 259 IPR027500 GO:0003735|GO:0005840|GO:0006412
Gabi3595g00007 262 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3595g00007 262 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 252 - -
Gabi3595g00007 262 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Gabi3595g00007 262 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Gabi3595g00007 262 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3595g00007 Gabi-Chr3595 48796 51319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3595g00007 1 262 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 84.411 1.84e-161 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3595g00007 K02984 - gmx:100808747 480.715