Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3593g00002 ATGTCTAGCTATAGCATGTTCACGGATGTGACCTACAAGATAGTGATGAAAGGCATGACAACAACTGAGGAGAAGGATATCTTGAATGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCATTGATGGGTCCCTCTGGAAGTGGAAAGACAACTCTTTTAAATCTGCTTGGAGGCAGACTAAGTAGTCAGCACACAATTGGTGGTTCTATCACTTACAATGACCAATCATATTCCAAGTTCCTTAAGAGCAGGATAGGATTCGTGACACAAGATGATGTTCTGTTTCCTCACCTAACTGTGAAAGAAACACTGACATTCGCAGCCAGACTAAGACTGCCAAAGACATGCACGAAGGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAGCTTGGCTTGGAGAGGTGCCAAGATACTATGATTGGTGGTTCCTTTGTTCGTGGAATATCTGGTGGAGAGAGGAAGAGAGTTTCTATTGGCAATGAGATCATAATCAACCCTTCTCTTTTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTAAGGATTGTTCAGATGCTGCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACAACAATCCACCAACCATCAAGCAGACTCTTTCACAAATTTGACAAGTTGATCCTTCTTGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCACTAGCAATGAGTTACTTCCAATCTATAGGATGTACACCACTTATTTCCATGAACCCAGCAGAGTTTTTGCTAGACCTTGCCAATGGAAACATAAATGATGTTTCCCTACCATCAGAGTTGGAGGACAAAGTGCAAATGGGAAATGCAGAAGCTGAAACACTGAATGGGAAACCATCACCGGCAGTGGTACATGAGTATCTGGTGGAGGCACATGAAACAAGAGTTGCAGAAACAAAGAAAAAAATAATGGTTCCTATCCCCCTTGATGAAGCACTGAAGTCTAAGGTATGTTCTTCTAAAAGACAATGGGGAGCAAGTTGGGAGGAGCAATATTCCATACTTTTTTGGAGAGGAATCAAAGAACGGAGACATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTTTATCCACTGCAATCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAAGAACCCAAAAGATCTCCAAGATCAGGCTGGACTGCTTTTCTTCATTGCTGTTTTCTGGGGATTCTTTCCTGTTTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTTACTAAGGAACGAGCAGCAGATATGTACAGACTAAGTGCATACTTCTTGGCTAGAACTACAAGTGACCTTCCACTAGACCTGATATTACCAGTACTTTTTCTTCTTGTGGTTTACTTCATGGCTGGTCTGAGGCTGAGTGCAGGCCCCTTTTTCCTCACCATTCTTACTGTTTTCCTCTGCATTGTGGCTGCTCAGGGACTTGGACTTGCTATTGGTGCTACTCTTATGGACTTGAAAAGAGCTACAACTTTGGCTTCAGTAACTGTGATGACCTTCATGCTGGCTGGAGGATTTTTTGTGCAGAAAGTCCCAGTATTTATTTCATGGATCCGCTACATGTCTTTCAACTACCACACTTACAAACTTTTGCTCAAGGTGCAATACAATCACATCACACCTACCATAAATGGGATTAAAATTGACAATGGTTTAACAGAGGTAGCTGCTCTGATAGTCATGGTTTTTGGTTACCGTTTCTTGGCTTATCTTTCTTTGAGGAGAATGAAACTTCAATCTGGAGCTTAA 1806 0.4181 MSSYSMFTDVTYKIVMKGMTTTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSSQHTIGGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTFAARLRLPKTCTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGISGGERKRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASLAMSYFQSIGCTPLISMNPAEFLLDLANGNINDVSLPSELEDKVQMGNAEAETLNGKPSPAVVHEYLVEAHETRVAETKKKIMVPIPLDEALKSKVCSSKRQWGASWEEQYSILFWRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDAKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSAGPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPVFISWIRYMSFNYHTYKLLLKVQYNHITPTINGIKIDNGLTEVAALIVMVFGYRFLAYLSLRRMKLQSGA 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3593g00002 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 243 IPR027417 -
Gabi3593g00002 601 Pfam ABC transporter 28 180 IPR003439 GO:0005524
Gabi3593g00002 601 ProSitePatterns ABC transporters family signature. 152 166 IPR017871 GO:0005524|GO:0016887
Gabi3593g00002 601 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 589 - -
Gabi3593g00002 601 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 252 IPR003439 GO:0005524
Gabi3593g00002 601 SMART AAA_5 37 229 IPR003593 GO:0016887
Gabi3593g00002 601 Gene3D - 8 246 IPR027417 -
Gabi3593g00002 601 FunFam ABC transporter G family member 22 15 246 - -
Gabi3593g00002 601 Pfam ABC-2 type transporter 346 555 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3593g00002 Gabi-Chr3593 8796 17138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3593g00002 27 281 Calmodulin-binding Proteins AT2G36910 28.352 4.28e-15 77.4