Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3592g00030 ATGTCGAAATCCAACGCTACCAGCACCACCTCATCACCGAAACCCAAGTGGGTTCTCCCTTATCGAACCCAAAACCTGAGTGAACTCTACACGTTGGGCAGAAAACTGGGTCAGGGTCAATTTGGCACCACCTACTTGTGCACACACAACACCACAGGTCGCAACTTTGCGTGCAAGTCAATCCCAAAGCGCAAGCTGTTTTGCAAAGAGGACTATGATGATGTGTGGAGAGAGGTTCAGATAATGCACCACTTGTCAGAGCACCCTAATGTTGTGAGGATCCATGGCACCTATGAGGACTCATCTTTTGTTCACTTGGTCATGGAACTCTGTGAAGGTGGCGAGTTATTCGATAGGATCGTGCAGAAAGGGCACTATAGTGAGAGACAAGCTGCAAAGTTGATTAAGACCATTGTTGAGGTTGTTGAGGCTTGTCATTCTCTTGGGGTCATGCATAGAGACCTTAAACCTGAGAACTTTTTGTTTGACACTGTTGAAGAGGATGCTAAACTCAAAACCATTGATTTTGGGTTGTCTGTTTTTTACAAGCCAGGCGAAATCTTTTGTGACGTTGTTGGAAGCCCATACTATGTTGCACCAGAGGTCTTGCACAAGCATTATGGACCTGAATTAGACGTGTGGAGTGCTGGGGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCTGAAACTGAGCAAGGGATCTTCCGACAGATTTTTCTTGGAAGACTTGATTTCCAGTTTGAACCATGGCCTAGCATTTCAGACAGTGCAAAGGATCTAATTCAAAAAATGCTTGATCGAAATCCAAATACAAGGCTTACAGCTCACAAAGTACTCTGCCACCCATGGATTGTTGATGACAACATTGCACCAGATAAACCTCTTGATTCTGCTGTTTTATCACGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAAAAGATGGCTTTACATGTTATTGCAGAGAGGCTATCTGAGGAAGAAATTGGTGGTCTGAAAGAGTTATTCAAGATGATTGATGCTGACAATAGTGGAACTATAACATTTGATGAGCTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCAGATATTGATAATAATGGGACAATTGACTATGGTGAATTCATTGCTGCTACGGTCCACTTAAATAAGCTGGAGAGAGAGGAAAATCTGTTGTCAGCGTTCTCCTACTTTGACAAAGATGGAAGTGGTTACATAACTATTGATGAGATACAACAAGCTTGTAAGGAGTTTGGTTTGGATGATGTCCATATTGATGAAATGGTCAAGGAAATTGATCAAGACAACGATGGACAAATAGATTATGGGGAATTTGCTGCTATGATGAGAAAGGGCAATGGAGGGATCGGAAGGCGAACCATGAGAAGCACACTCAATTTCATAGATGCTCTGGGAATAATAGGCAATGGATCCACTTAA 1491 0.4239 MSKSNATSTTSSPKPKWVLPYRTQNLSELYTLGRKLGQGQFGTTYLCTHNTTGRNFACKSIPKRKLFCKEDYDDVWREVQIMHHLSEHPNVVRIHGTYEDSSFVHLVMELCEGGELFDRIVQKGHYSERQAAKLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVEEDAKLKTIDFGLSVFYKPGEIFCDVVGSPYYVAPEVLHKHYGPELDVWSAGVILYILLSGVPPFWAETEQGIFRQIFLGRLDFQFEPWPSISDSAKDLIQKMLDRNPNTRLTAHKVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALHVIAERLSEEEIGGLKELFKMIDADNSGTITFDELKEGLKRVGSELMESEIKDLMDAADIDNNGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLDDVHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRSTLNFIDALGIIGNGST 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3592g00030 496 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Gabi3592g00030 496 SUPERFAMILY EF-hand 327 467 IPR011992 -
Gabi3592g00030 496 Pfam EF-hand domain pair 406 467 IPR002048 GO:0005509
Gabi3592g00030 496 Pfam EF-hand domain pair 336 396 IPR002048 GO:0005509
Gabi3592g00030 496 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Gabi3592g00030 496 Pfam Protein kinase domain 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3592g00030 496 CDD EFh 336 395 IPR002048 GO:0005509
Gabi3592g00030 496 ProSiteProfiles EF-hand calcium-binding domain profile. 441 472 IPR002048 GO:0005509
Gabi3592g00030 496 ProSiteProfiles Protein kinase domain profile. 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3592g00030 496 SUPERFAMILY Protein kinase-like (PK-like) 30 300 IPR011009 -
Gabi3592g00030 496 Gene3D Phosphorylase Kinase; domain 1 32 116 - -
Gabi3592g00030 496 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Gabi3592g00030 496 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Gabi3592g00030 496 Gene3D - 401 494 - -
Gabi3592g00030 496 FunFam CDPK-related kinase 3 22 190 - -
Gabi3592g00030 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Gabi3592g00030 496 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Gabi3592g00030 496 Gene3D Transferase(Phosphotransferase) domain 1 117 328 - -
Gabi3592g00030 496 FunFam calcium-dependent protein kinase SK5 325 397 - -
Gabi3592g00030 496 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Gabi3592g00030 496 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 462 - -
Gabi3592g00030 496 SMART serkin_6 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3592g00030 496 FunFam Calcium-dependent protein kinase 1 32 115 - -
Gabi3592g00030 496 CDD STKc_CAMK 30 287 - -
Gabi3592g00030 496 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Gabi3592g00030 496 CDD EFh 408 467 IPR002048 GO:0005509
Gabi3592g00030 496 Gene3D - 329 400 - -
Gabi3592g00030 496 FunFam Calcium-dependent protein kinase SK5 401 496 - -
Gabi3592g00030 496 SMART efh_1 371 399 IPR002048 GO:0005509
Gabi3592g00030 496 SMART efh_1 407 435 IPR002048 GO:0005509
Gabi3592g00030 496 SMART efh_1 441 469 IPR002048 GO:0005509
Gabi3592g00030 496 SMART efh_1 335 363 IPR002048 GO:0005509
Gabi3592g00030 496 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
Gabi3592g00030 496 FunFam Calcium-dependent protein kinase SK5 198 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3592g00030 Gabi-Chr3592 341188 346727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3592g00030 11 495 EF-hand Containing Proteins AT1G35670 76.423 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3592g00030 Pkinase 2.1e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3592g00030 K13412 - gmx:100790443 923.309