Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3589g00003 ATGGAAGGTGACAGGACAATCCCTGCTCCATCAGATGGTGTCGTGGATGTTGTTCAGAAAATTAGAGCACTGCATGGGAGGACTACTGGCCCTACAAGGCGCTCTACAAAGGGACAATGGACAGCTGAGGAGGATGAGATTTTGGGGAAGGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCTGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTGCATAGGTGGCAGAAAGTCTTAGATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATGATTATTGATTTGGTGAACAAATTTGGGCCTAAAAAGTGGTCTACTATCGCTCAGCATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCACTAATACGTGCTCATCAGATTTATGGTAACAGATGGGCAGAATTGACGAAGTTCTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTAGCATCGGGCTTGCTTAACCAGTTACAAACAGTACCACTTGATGGAAATCCAAATCAATCCATTGCTTCAACCTCTTCAAGGTTGCAATGTAGTGGAGAAGATAATGGTCCTAGGGGGACTGAAGGAGAGGAAGTTTCACAATGTAGCCAGGAGACAGCTAATGCTGGTCACTTTCTGTCTGCCACAGAGATGAGCCATGTTGTTTTACAAACTATGGAAGAATACACGCCAAATGAAGAATCTAATGTAGGAAAGGATTATAGTCCTAATCAAGCATCCTGTTCAGAGCCATATTACGTGTCTCTGGATGATGTTACTGCATCCTTCCCTGAAATAGCTCGCCAAGAGGAATCGTCACAGTTGCAAAATGATTGTATAGCTCCTAATGAAAGTCATGACATGGTGAATGTTCCATTTCAGACTTCAGCAGGGTTTGGTGTTGCGATGTCCATGGGAACTATGGCTATGGACTCTGTTAAACGTGAGGACATGATAATATCTGATGGGGAATTTTGCAGAATCCTATTTTCAGAGGCAATGAGTGATGACTGCTTTTCCTCTGGAGATTATAATATTGGTGTAAATATGGTTAACTTGTCTGGTTGCGCTTCATTTGTTTGTCAATCTTTACCATCTGTCCCATCAGGACCTTCTTCTACTGGTGGTAGGTTGCTGCATACTGCCGAAGCCAATCAGTTAGTTGGGTCTGATGATCAGCAGTTTGTCTGCAGAGCACATGATAACTTAATTTATGCCAATGAATCATCCAGTTCTCCTTGTATTGATAGGATAGATAGTGCAGAAATGCAAGAGCCATCAGGTGTTGTGAAGGATACTTCAAAATTGGTCCCAGTAAACAGTTTTGATGATGGATCAGATAATATGCAAAGTTGCTATCCAATGGATGAAGGGCCGAATGTGCATAGAGAACAGGAGGACACAGGAGGTCTATGTTATGAACCTCCCTGTTTTCCAAGCTTGGATATTCCTTTCTTTAGCTGTGATCTTATACAATCTGGAGGTGATATGCAGCAAGAATTTAGTCCCCTAGGTATCCGGCAGTTTAAGATGTCTTCTATGAACTGCCTAACTCCTTTCAGATTGTGGGACTCACCTTCTCGCAATGATAGTCCAGATGCTTTGTTGAATAGTGCTGCTAAAACTTTCAAGGGTACACCTTTCAGATTGTGGGACTCGCCTCACAATGATAGTCCAGATGCTTTGTTAAGAAGTGCTGCTAAAACTTTCAAGGGTACACCATCCATAGTAAAGAAACGACACCGAGACCTTTTATCTCCGCTATCAGATAGAAGAACTTACAAGAAACTTGAGATTGACATGACATCAACCTTGATAACAAATTTTTCCCGTTTGGATGTCATGTTTGATGAAAATGATACTCAGGGAGCAGATTTGCTTTCTCCATCTTCAATACAAAAAAAAAATTCTGGTACCTCTGTTGAAGATGATAAAGAAAATTGTGTACAAGCTTTTAAAGTGGAACAAGCAGAGGAGAAAAAAAAATCTGCAATTTTGAATGACAAGAAGTCAGAAAATGATACAGGTGACAGTAATTCTCAGGATAAGGTTAAGCAGCAACCTCTTGATGTTGATACTAAGATGAAGAATGATGTTAATGCTGTGGCTGAGATTGTGCTGCAACGTTCTGGAGTTTTGGTTGAACATGATATGAATGACCTGTTACTGTATTCTCATGATCAAGTTGGTTTTAAACCGGACAGAACTCTAAGTGCTAGAACTCATAAAAATCCATGCTCAAGGGTCAATTCTCCTTCTGATCGAGTAAAGGAGCAGGAAAGACTTTCAGTTGCTGTTACTTGTGTTCAATCCATCTGTTCATCAGACCCAGGGGAGAAGTCGGGTGATCATCCCAGAAACGATGGTGGATTTGAAACATGTAGCATATTTGGCGGAACACCTTTTTGGAAAGGCATTGAATCACCTTCAGCATGGAAATCTCCTTGGTTGATCAACACTTTTTTGTCTAGCCCCAGGATTGATACTGAACTTACAATTGAGGATTTTGGGTATTTCCTGAGCCCAGGTAACAAAAGCTATGATGCAATCGGGTTGATGAAACAGGTAAGCGAACAAACTGCTGCTCAATATGCCAATGCTCAGGAGATTTTGGGTAATGAAGTTCCTAAGGCGTTACCAAAGGATGCATCTGGAAACGATAGAGATGGGAACAAAGAAAATAACGATCCTCATAATCAGCGTGGGAACCATTTTCAGTTGGCTTCAAATGCTTTGGTGGAGCGACGCATACTTGACTTTAGCGAATGCGAAACTCCGGGCAAGGGTGATAACGGCAAATCCTCAACTATGAGCGTATCAAGCCCTCCTTCGAATTTGTTGAAGGGTTGTAGATAG 2976 0.4147 MEGDRTIPAPSDGVVDVVQKIRALHGRTTGPTRRSTKGQWTAEEDEILGKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLDPELVKGPWSKEEDEMIIDLVNKFGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLNQLQTVPLDGNPNQSIASTSSRLQCSGEDNGPRGTEGEEVSQCSQETANAGHFLSATEMSHVVLQTMEEYTPNEESNVGKDYSPNQASCSEPYYVSLDDVTASFPEIARQEESSQLQNDCIAPNESHDMVNVPFQTSAGFGVAMSMGTMAMDSVKREDMIISDGEFCRILFSEAMSDDCFSSGDYNIGVNMVNLSGCASFVCQSLPSVPSGPSSTGGRLLHTAEANQLVGSDDQQFVCRAHDNLIYANESSSSPCIDRIDSAEMQEPSGVVKDTSKLVPVNSFDDGSDNMQSCYPMDEGPNVHREQEDTGGLCYEPPCFPSLDIPFFSCDLIQSGGDMQQEFSPLGIRQFKMSSMNCLTPFRLWDSPSRNDSPDALLNSAAKTFKGTPFRLWDSPHNDSPDALLRSAAKTFKGTPSIVKKRHRDLLSPLSDRRTYKKLEIDMTSTLITNFSRLDVMFDENDTQGADLLSPSSIQKKNSGTSVEDDKENCVQAFKVEQAEEKKKSAILNDKKSENDTGDSNSQDKVKQQPLDVDTKMKNDVNAVAEIVLQRSGVLVEHDMNDLLLYSHDQVGFKPDRTLSARTHKNPCSRVNSPSDRVKEQERLSVAVTCVQSICSSDPGEKSGDHPRNDGGFETCSIFGGTPFWKGIESPSAWKSPWLINTFLSSPRIDTELTIEDFGYFLSPGNKSYDAIGLMKQVSEQTAAQYANAQEILGNEVPKALPKDASGNDRDGNKENNDPHNQRGNHFQLASNALVERRILDFSECETPGKGDNGKSSTMSVSSPPSNLLKGCR 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3589g00003 991 CDD SANT 91 135 IPR001005 -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 205 245 - -
Gabi3589g00003 991 Gene3D - 36 88 - -
Gabi3589g00003 991 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 663 684 - -
Gabi3589g00003 991 FunFam Transcriptional activator Myb isoform A 36 88 - -
Gabi3589g00003 991 FunFam Transcription factor MYB3R-2 142 204 - -
Gabi3589g00003 991 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Gabi3589g00003 991 Coils Coil 694 714 - -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 912 943 - -
Gabi3589g00003 991 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Gabi3589g00003 991 Gene3D - 89 140 - -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 700 719 - -
Gabi3589g00003 991 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Gabi3589g00003 991 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Gabi3589g00003 991 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Gabi3589g00003 991 PANTHER MYB PROTEIN-RELATED 37 122 - -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 968 985 - -
Gabi3589g00003 991 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Gabi3589g00003 991 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 921 939 - -
Gabi3589g00003 991 CDD SANT 40 83 IPR001005 -
Gabi3589g00003 991 Gene3D - 142 203 - -
Gabi3589g00003 991 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Gabi3589g00003 991 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 959 991 - -
Gabi3589g00003 991 SMART sant 88 137 IPR001005 -
Gabi3589g00003 991 SMART sant 140 188 IPR001005 -
Gabi3589g00003 991 SMART sant 36 85 IPR001005 -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 700 732 - -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 663 677 - -
Gabi3589g00003 991 FunFam Transcriptional activator Myb isoform A 89 141 - -
Gabi3589g00003 991 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Gabi3589g00003 991 MobiDBLite consensus disorder prediction 205 227 - -
Gabi3589g00003 991 CDD SANT 143 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3589g00003 Gabi-Chr3589 8743 15536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3589g00003 5 991 MYB Transcription Factor Family AT4G32730 42.257 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3589g00003 Myb_DNA-binding 7.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3589g00003 - K09420 gmx:100811335 1468.75