Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3589g00001 ATGGAAGGTGACAGGACAATCCCTGCTCCATCAGATGGTGTCGTGGATGTTGTTCAGAAAATTAGAGCACTGCATGGGAGGACTACTGGCCCTACAAGGCGCTCTACAAAGGGACAATGGACAGCTGAGGAGGATGAGATTTTGGGGAAGGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCTGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTGCATAGGTGGCAGAAAGTCTTAGATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATGATTATTGATTTGGTGAACAAATTTGGGCCTAAAAAGTGGTCTACTATCGCTCAGCATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCACTAATACGTGCTCATCAGATTTATGGTAACAGATGGGCAGAATTGACGAAGTTCTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTAGCATCGGGCTTGCTTAACCAGTTACAAACAGTACCACTTGATGGAAATCCAAATCAATCCATTGCTTCAACCTCTTCAAGGTTGCAATGTAGTGGAGAAGATAATGGTCCTAGGGGGACTGAAGGAGAGGAAGTTTCACAATGTAGCCAGGAGACAGCTAATGCTGGTCACTTTCTGTCTGCCACAGAGATGAGCCATGTTGTTTTACAAACTATGGAAGAATACACGCCAAATGAAGAATCTAATGTAGGAAAGGATTATAGTCCTAATCAAGCATCCTGTTCAGAGCCATATTACGTGTCTCTGGATGATGTTACTGCATCCTTCCCTGAAATAGCTCGCCAAGAGGTTTGCTCTTCTCATTTCATTGAGCAGAAATACTCACACGAATATAGAAATTCCTTAAATGAGAATTGCCAGCTTTATTTGCATGACTTACCCGATATTTCCTCACTGGACTTTGTGCAGGAATCGTCACAGTTGCAAAATGATTGTATAGCTCCTAATGAAAGTCATGACATGGTGAATGTTCCATTTCAGACTTCAGCAGGGTTTGGTGTTGCGATGTCCATGGGAACTATGGCTATGGACTCTGTTAAACGTGAGGACATGATAATATCTGATGGGGAATTTTGCAGAATCCTATTTTCAGAGGCAATGAGTGATGACTGCTTTTCCTCTGGAGATTATAATATTGGTGTAAATATGGTTAACTTGTCTGGTTGCGCTTCATTTGTTTGTCAATCTTTACCATCTGTCCCATCAGGACCTTCTTCTACTGGTGGTAGGTTGCTGCATACTGCCGAAGCCAATCAGTTAGTTGGGTCTGATGATCAGCAGTTTGTCTGCAGAGCACATGATAACTTAATTTATGCCAATGAATCATCCAGTTCTCCTTGTATTGATAGGATAGATAGTGCAGAAATGCAAGAGCCATCAGGTGTTGTGAAGGATACTTCAAAATTGGTCCCAGTAAACAGTTTTGATGATGGATCAGATAATATGCAAAGTTGCTATCCAATGGATGAAGGGCCGAATGTGCATAGAGAACAGGAGGACACAGGAGGTCTATGTTATGAACCTCCCTGTTTTCCAAGCTTGGATATTCCTTTCTTTAGCTGTGATCTTATACAATCTGGAGGTGATATGCAGCAAGAATTTAGTCCCCTAGGTATCCGGCAGTTTAAGATGTCTTCTATGAACTGCCTAACTCCTTTCAGATTGTGGGACTCACCTTCTCGCAATGATAGTCCAGATGCTTTGTTGAATAGTGCTGCTAAAACTTTCAAGGGTACACCTTTCAGATTGTGGGACTCGCCTCACAATGATAGTCCAGATGCTTTGTTAAGAAGTGCTGCTAAAACTTTCAAGGGTACACCATCCATAGTAAAGAAACGACACCGAGACCTTTTATCTCCGCTATCAGATAGAAGAACTTACAAGAAACTTGAGATTGACATGACATCAACCTTGATAACAAATTTTTCCCGTTTGGATGTCATGTTTGATGAAAATGATACTCAGGGAGCAGATTTGCTTTCTCCATCTTCAATACAAAAAAAAAATTCTGGTACCTCTGTTGAAGATGATAAAGAAAATTGTGTACAAGCTTTTAAAGTGGAACAAGCAGAGGAGAAAAAAAAATCTGCAATTTTGAATGACAAGAAGTCAGAAAATGATACAGGTGACAGTAATTCTCAGGATAAGGTTAAGCAGCAACCTCTTGATGTTGATACTAAGATGAAGAATGATGTTAATGCTGTGGCTGAGATTGTGCTGCAACGTTCTGGAGTTTTGGTTGAACATGATATGAATGACCTGTTACTGTATTCTCATGATCAAGTTGGTTTTAAACCGGACAGAACTCTAAGTGCTAGAACTCATAAAAATCCATGCTCAAGGGTCAATTCTCCTTCTGATCGAGTAAAGGAGCAGGAAAGACTTTCAGTTGCTGTTACTTGTGTTCAATCCATCTGTTCATCAGACCCAGGGGAGAAGTCGGGTGATCATCCCAGAAACGATGGTGGATTTGAAACATGTAGCATATTTGGCGGAACACCTTTTTGGAAAGGCATTGAATCACCTTCAGCATGGAAATCTCCTTGGTTGATCAACACTTTTTTGTCTAGCCCCAGGATTGATACTGAACTTACAATTGAGGATTTTGGGTATTTCCTGAGCCCAGGTAACAAAAGCTATGATGCAATCGGGTTGATGAAACAGGTAAGCGAACAAACTGCTGCTCAATATGCCAATGCTCAGGAGATTTTGGGTAATGAAGTTCCTAAGGCGTTACCAAAGGATGCATCTGGAAACGATAGAGATGGGAACAAAGAAAATAACGATCCTCATAATCAGCGTGGGAACCATTTTCAGTTGGCTTCAAATGCTTTGGTGGAGCGACGCATACTTGACTTTAGCGAATGCGAAACTCCGGGCAAGGGTGATAACGGCAAATCCTCAACTATGAGCGTATCAAGCCCTCCTTCGAATTTGTTGAAGGGTTGTAGATAG 3096 0.4131 MEGDRTIPAPSDGVVDVVQKIRALHGRTTGPTRRSTKGQWTAEEDEILGKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLDPELVKGPWSKEEDEMIIDLVNKFGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLNQLQTVPLDGNPNQSIASTSSRLQCSGEDNGPRGTEGEEVSQCSQETANAGHFLSATEMSHVVLQTMEEYTPNEESNVGKDYSPNQASCSEPYYVSLDDVTASFPEIARQEVCSSHFIEQKYSHEYRNSLNENCQLYLHDLPDISSLDFVQESSQLQNDCIAPNESHDMVNVPFQTSAGFGVAMSMGTMAMDSVKREDMIISDGEFCRILFSEAMSDDCFSSGDYNIGVNMVNLSGCASFVCQSLPSVPSGPSSTGGRLLHTAEANQLVGSDDQQFVCRAHDNLIYANESSSSPCIDRIDSAEMQEPSGVVKDTSKLVPVNSFDDGSDNMQSCYPMDEGPNVHREQEDTGGLCYEPPCFPSLDIPFFSCDLIQSGGDMQQEFSPLGIRQFKMSSMNCLTPFRLWDSPSRNDSPDALLNSAAKTFKGTPFRLWDSPHNDSPDALLRSAAKTFKGTPSIVKKRHRDLLSPLSDRRTYKKLEIDMTSTLITNFSRLDVMFDENDTQGADLLSPSSIQKKNSGTSVEDDKENCVQAFKVEQAEEKKKSAILNDKKSENDTGDSNSQDKVKQQPLDVDTKMKNDVNAVAEIVLQRSGVLVEHDMNDLLLYSHDQVGFKPDRTLSARTHKNPCSRVNSPSDRVKEQERLSVAVTCVQSICSSDPGEKSGDHPRNDGGFETCSIFGGTPFWKGIESPSAWKSPWLINTFLSSPRIDTELTIEDFGYFLSPGNKSYDAIGLMKQVSEQTAAQYANAQEILGNEVPKALPKDASGNDRDGNKENNDPHNQRGNHFQLASNALVERRILDFSECETPGKGDNGKSSTMSVSSPPSNLLKGCR 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3589g00001 1031 CDD SANT 91 135 IPR001005 -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 205 245 - -
Gabi3589g00001 1031 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Gabi3589g00001 1031 Gene3D - 89 140 - -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 703 717 - -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 952 983 - -
Gabi3589g00001 1031 FunFam Transcription factor MYB3R-2 142 204 - -
Gabi3589g00001 1031 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 740 759 - -
Gabi3589g00001 1031 Coils Coil 734 754 - -
Gabi3589g00001 1031 Gene3D - 142 203 - -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 1008 1025 - -
Gabi3589g00001 1031 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 961 979 - -
Gabi3589g00001 1031 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Gabi3589g00001 1031 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 999 1031 - -
Gabi3589g00001 1031 CDD SANT 40 83 IPR001005 -
Gabi3589g00001 1031 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Gabi3589g00001 1031 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Gabi3589g00001 1031 SMART sant 88 137 IPR001005 -
Gabi3589g00001 1031 SMART sant 140 188 IPR001005 -
Gabi3589g00001 1031 SMART sant 36 85 IPR001005 -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 740 772 - -
Gabi3589g00001 1031 FunFam Transcriptional activator Myb isoform A 36 88 - -
Gabi3589g00001 1031 FunFam Transcriptional activator Myb isoform A 89 141 - -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 205 227 - -
Gabi3589g00001 1031 CDD SANT 143 183 IPR001005 -
Gabi3589g00001 1031 MobiDBLite consensus disorder prediction 703 724 - -
Gabi3589g00001 1031 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Gabi3589g00001 1031 Gene3D - 36 88 - -
Gabi3589g00001 1031 PANTHER MYB PROTEIN-RELATED 37 121 - -
Gabi3589g00001 1031 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Gabi3589g00001 1031 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Gabi3589g00001 1031 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3589g00001 Gabi-Chr3589 8743 15536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3589g00001 5 1031 MYB Transcription Factor Family AT4G32730 42.233 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3589g00001 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3589g00001 - K09420 gmx:100811335 1539.63