Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3586g00004 ATGAAGATGAAGGTGATGGGTAAGAAGAGTAAACGGGTTTTCTTCTTATGGTGGTTTGGAATGACTGTGCAGCTCTGTTTCTTGCTTGGTGCCTGTTCCGAGAAGACATCATTTAGAAGAGGTTTAAGGGAAATCAACAGCCTGGAACCAACACCTTCTTTTTCTGAAGTCAAGCTGAATACAGAAAATCATCAGCAGTTGGTTGTTGACAATGGCATTGTTACCGTCATTTTGTCAAGACCTGAGGGCTACGTCCTTGGAATATCATATAATGGAATTGACAATATACTTGAAGCTGAAAACGAAGAACAAGATAGAGGGTACTTGGACGTTGTATGGAATGAACCAGGAAAATCTAGTAATTTTCAGAGAATCCATGGAACAAATTTTTCGGTTATAGCAGCTGACGGGAATCTGGTGGAGGTCTCATTTTTAAGAACGTGGACATATTCCATGAGTGGCTCCAATGTCCCCATAAACATAGACATAAGATATATTTTTCGAAGTGGTGATTCAGGATTTTATTCCTACGCAATATTTGATCGTCCTGAAGGATTTCCGGCGGTGCAGGTTGATCAAATTAGGATTGTTTTCAAACTCAAGAAAGACAGGTTCAACTATATGGCTGTATCAGATAACAAGCAAAGAAGCATGCCAACGATGAGAGATAGAGAAACAGGTCAAATTCTGGCTTACCCTGAAGCAGTTCTTCTAACCAGACCAATTAACCCAGAATTTAGAGGAGAGGTGGATGACAAGTACCAATACTCATGTGAGAACACAGACAACACTGTTCATGGATGGATTAGTCTTGATCCTGATGCACCCGTGGGTTTCTGGATGATAACACCTAGTAATGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACTTCTCATGTTGGCCCCTTCACCCTCTCGATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTAACCATGGCATTTCAAGAAGGTGAGACTTATAAAAAGGTTTTTGGTCCTGTATTTGTCTACGTTAACTCTGCTTCAAGCAACGAGGATTCACTATCCCTCTGGTCTGATGCTGTTCAGCAGCTATCCAAGGAAGTTAAAAGCTGGCCTTACGATTTTCCTCGATCAGAAGATTACCTTCCACCCAATCAACGAGGAACAGTATTTGGAAGATTACTAGTCCAAGATTGGTACATCAGGGAAGGAAGATTTCAATATGCTAATAATGCTTATATTGGTTTAGCTTTGCCTGGAGATGCAGGGTCATGGCAGAAAGAAAGTAAGGGCTATCAATTCTGGACTCGAGCTGACACCAAGGGATACTTCGTAATAAAAAATATTGTGCCAGGTGATTATAATCTGTATGCTTGGGTTCCTGGCTTCATTGGAGATTACAGATATAATGCTACAATTACCATCACACCAGGAAGAGTCATCAAATTGGACTCACTTGTATATAGTCCTCCAAGAAGTGGACCTACCCTTTGGGAAATTGGGATCCCAGATCGCTCCGCTGCAGAATTCTATGTACCAGACCCTTACCCCACGCTCATGAACAAATTATACAACGAACAGCGCAGAGACAAGTATAGGCAATACGGGTTGTGGGAACGTTATGCTGATTTATATCCAAATGATGATCTAGTGTACACTATTGGTGTCAACAAGTATAATAAGGATTGGTTTTTTGCTCATGTTACTAGAAACTTAGGAAATAAGACATACCAACCAACGACATGGCAGATTATATTTGACAATCCAACTGACATATTGGGAGGAAACTACACACTACAATTGGCCTTGGCATGTGCTGCTGATGCTAACCTGCAGGTTCGGTTCAATGACCCTAGCGCTTATCCACCCCACTTTGCAACAGGGTCCATAGGTGGAGACAATGCCATAGCAAGGCATGGCATCCATGGATTGCATTGGCTATTCAGCATTGATGTACCAGGTGAACGTTTTGTGAAAGGAAAGAACACCATCTATCTGAGGCAATCGAGAGCTATAAATCCTTTCCAAGGAGTTATGTATGATTATATCCGTTTAGAACAACCACCAGCTCCAACGACTTGA 2073 0.4202 MKMKVMGKKSKRVFFLWWFGMTVQLCFLLGACSEKTSFRRGLREINSLEPTPSFSEVKLNTENHQQLVVDNGIVTVILSRPEGYVLGISYNGIDNILEAENEEQDRGYLDVVWNEPGKSSNFQRIHGTNFSVIAADGNLVEVSFLRTWTYSMSGSNVPINIDIRYIFRSGDSGFYSYAIFDRPEGFPAVQVDQIRIVFKLKKDRFNYMAVSDNKQRSMPTMRDRETGQILAYPEAVLLTRPINPEFRGEVDDKYQYSCENTDNTVHGWISLDPDAPVGFWMITPSNEFRNAGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYVNSASSNEDSLSLWSDAVQQLSKEVKSWPYDFPRSEDYLPPNQRGTVFGRLLVQDWYIREGRFQYANNAYIGLALPGDAGSWQKESKGYQFWTRADTKGYFVIKNIVPGDYNLYAWVPGFIGDYRYNATITITPGRVIKLDSLVYSPPRSGPTLWEIGIPDRSAAEFYVPDPYPTLMNKLYNEQRRDKYRQYGLWERYADLYPNDDLVYTIGVNKYNKDWFFAHVTRNLGNKTYQPTTWQIIFDNPTDILGGNYTLQLALACAADANLQVRFNDPSAYPPHFATGSIGGDNAIARHGIHGLHWLFSIDVPGERFVKGKNTIYLRQSRAINPFQGVMYDYIRLEQPPAPTT 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3586g00004 690 CDD RGL4_C 495 683 - -
Gabi3586g00004 690 FunFam Rhamnogalacturonate lyase B 380 480 - -
Gabi3586g00004 690 Gene3D - 380 482 - -
Gabi3586g00004 690 Pfam Polysaccharide lyase family 4, domain II 407 479 IPR029413 -
Gabi3586g00004 690 Pfam Rhamnogalacturonate lyase family 56 250 IPR010325 -
Gabi3586g00004 690 Gene3D - 59 361 IPR014718 GO:0030246
Gabi3586g00004 690 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 686 - -
Gabi3586g00004 690 SUPERFAMILY Starch-binding domain-like 378 481 IPR013784 GO:0030246
Gabi3586g00004 690 SUPERFAMILY Galactose mutarotase-like 61 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3586g00004 690 CDD RGL4_N 60 346 - -
Gabi3586g00004 690 SUPERFAMILY Galactose-binding domain-like 490 683 IPR008979 -
Gabi3586g00004 690 CDD RGL4_M 383 483 IPR029413 -
Gabi3586g00004 690 Gene3D - 490 683 - -
Gabi3586g00004 690 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Gabi3586g00004 690 Pfam Polysaccharide lyase family 4, domain III 493 682 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3586g00004 Gabi-Chr3586 28436 34156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3586g00004 54 685 Polysaccharide Lyase AT1G09890 55.975 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3586g00004 K18195 - gmx:100776664 1169.45