Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3586g00003 ATGAAGATGAAGGTGATGGGTAAGAAGAGTAAACGGGTTTTCTTCTTATGGTGGTTTGGAATGACTGTGCAGCTCTGTTTCTTGCTTGGTGCCTGTTCCGAGAAGACATCATTTAGAAGAGGTTTAAGGGAAATCAACAGCCTGGAACCAACACCTTCTTTTTCTGAAGTCAAGCTGAATACAGAAAATCATCAGCAGGTGATGCTATTGGTTGTTGACAATGGCATTGTTACCGTCATTTTGTCAAGACCTGAGGGCTACGTCCTTGGAATATCATATAATGGAATTGACAATATACTTGAAGCTGAAAACGAAGAACAAGATAGAGGGTACTTGGACGTTGTATGGAATGAACCAGGAAAATCTAGTAATTTTCAGAGAATCCATGGAACAAATTTTTCGGTTATAGCAGCTGACGGGAATCTGGTGGAGGTCTCATTTTTAAGAACGTGGACATATTCCATGAGTGGCTCCAATGTCCCCATAAACATAGACATAAGATATATTTTTCGAAGTGGTGATTCAGGATTTTATTCCTACGCAATATTTGATCGTCCTGAAGGATTTCCGGCGGTGCAGGTTGATCAAATTAGGATTGTTTTCAAACTCAAGAAAGACAGGTTCAACTATATGGCTGTATCAGATAACAAGCAAAGAAGCATGCCAACGATGAGAGATAGAGAAACAGGTCAAATTCTGGCTTACCCTGAAGCAGTTCTTCTAACCAGACCAATTAACCCAGAATTTAGAGGAGAGGTGGATGACAAGTACCAATACTCATGTGAGAACACAGACAACACTGTTCATGGATGGATTAGTCTTGATCCTGATGCACCCGTGGGTTTCTGGATGATAACACCTAGTAATGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACTTCTCATGTTGGCCCCTTCACCCTCTCGATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTAACCATGGCATTTCAAGAAGGTGAGACTTATAAAAAGGTTTTTGGTCCTGTATTTGTCTACGTTAACTCTGCTTCAAGCAACGAGGATTCACTATCCCTCTGGTCTGATGCTGTTCAGCAGCTATCCAAGGAAGTTAAAAGCTGGCCTTACGATTTTCCTCGATCAGAAGATTACCTTCCACCCAATCAACGAGGAACAGTATTTGGAAGATTACTAGTCCAAGATTGGTACATCAGGGAAGGAAGATTTCAATATGCTAATAATGCTTATATTGGTTTAGCTTTGCCTGGAGATGCAGGGTCATGGCAGAAAGAAAGTAAGGGCTATCAATTCTGGACTCGAGCTGACACCAAGGGATACTTCGTAATAAAAAATATTGTGCCAGGTGATTATAATCTGTATGCTTGGGTTCCTGGCTTCATTGGAGATTACAGATATAATGCTACAATTACCATCACACCAGGAAGAGTCATCAAATTGGACTCACTTGTATATAGTCCTCCAAGAAGTGGACCTACCCTTTGGGAAATTGGGATCCCAGATCGCTCCGCTGCAGAATTCTATGTACCAGACCCTTACCCCACGCTCATGAACAAATTATACAACGAACAGCGCAGAGACAAGTATAGGCAATACGGGTTGTGGGAACGTTATGCTGATTTATATCCAAATGATGATCTAGTGTACACTATTGGTGTCAACAAGTATAATAAGGATTGGTTTTTTGCTCATGTTACTAGAAACTTAGGAAATAAGACATACCAACCAACGACATGGCAGATTATATTTGACAATCCAACTGACATATTGGGAGGAAACTACACACTACAATTGGCCTTGGCATGTGCTGCTGATGCTAACCTGCAGGTTCGGTTCAATGACCCTAGCGCTTATCCACCCCACTTTGCAACAGGGTCCATAGGTGGAGACAATGCCATAGCAAGGCATGGCATCCATGGATTGCATTGGCTATTCAGCATTGATGTACCAGGTGAACGTTTTGTGAAAGGAAAGAACACCATCTATCTGAGGCAATCGAGAGCTATAAATCCTTTCCAAGGAGTTATGTATGATTATATCCGTTTAGAACAACCACCAGCTCCAACGACTTGA 2082 0.4203 MKMKVMGKKSKRVFFLWWFGMTVQLCFLLGACSEKTSFRRGLREINSLEPTPSFSEVKLNTENHQQVMLLVVDNGIVTVILSRPEGYVLGISYNGIDNILEAENEEQDRGYLDVVWNEPGKSSNFQRIHGTNFSVIAADGNLVEVSFLRTWTYSMSGSNVPINIDIRYIFRSGDSGFYSYAIFDRPEGFPAVQVDQIRIVFKLKKDRFNYMAVSDNKQRSMPTMRDRETGQILAYPEAVLLTRPINPEFRGEVDDKYQYSCENTDNTVHGWISLDPDAPVGFWMITPSNEFRNAGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYVNSASSNEDSLSLWSDAVQQLSKEVKSWPYDFPRSEDYLPPNQRGTVFGRLLVQDWYIREGRFQYANNAYIGLALPGDAGSWQKESKGYQFWTRADTKGYFVIKNIVPGDYNLYAWVPGFIGDYRYNATITITPGRVIKLDSLVYSPPRSGPTLWEIGIPDRSAAEFYVPDPYPTLMNKLYNEQRRDKYRQYGLWERYADLYPNDDLVYTIGVNKYNKDWFFAHVTRNLGNKTYQPTTWQIIFDNPTDILGGNYTLQLALACAADANLQVRFNDPSAYPPHFATGSIGGDNAIARHGIHGLHWLFSIDVPGERFVKGKNTIYLRQSRAINPFQGVMYDYIRLEQPPAPTT 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3586g00003 693 CDD RGL4_C 498 686 - -
Gabi3586g00003 693 SUPERFAMILY Starch-binding domain-like 381 484 IPR013784 GO:0030246
Gabi3586g00003 693 CDD RGL4_M 386 486 IPR029413 -
Gabi3586g00003 693 SUPERFAMILY Galactose-binding domain-like 493 686 IPR008979 -
Gabi3586g00003 693 Pfam Rhamnogalacturonate lyase family 62 253 IPR010325 -
Gabi3586g00003 693 Pfam Polysaccharide lyase family 4, domain III 496 685 IPR029411 -
Gabi3586g00003 693 Pfam Polysaccharide lyase family 4, domain II 410 482 IPR029413 -
Gabi3586g00003 693 CDD RGL4_N 70 349 - -
Gabi3586g00003 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
Gabi3586g00003 693 SUPERFAMILY Galactose mutarotase-like 61 349 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3586g00003 693 Gene3D - 60 364 IPR014718 GO:0030246
Gabi3586g00003 693 Gene3D - 493 686 - -
Gabi3586g00003 693 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Gabi3586g00003 693 Gene3D - 383 485 - -
Gabi3586g00003 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 61 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3586g00003 Gabi-Chr3586 28436 34156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3586g00003 54 688 Polysaccharide Lyase AT1G09890 55.956 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3586g00003 K18195 - gmx:100776664 1164.06