LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3586g00001	ATGGCTGTCTTCAGCTTTTCTTCATCCTATAATCAAACCAAAAAGACCTTGTTTTTCATATTTACCATCTTCACTTTGTTCTTTGTACTCTCTAACACTGCAGAGGCAGTTTTCTTCAACTTCTCTAGTTTCCAGCCAAACTTGTATCAAATTAACTTTCAAGGTGATTCCTTTTTCTCAAATGGTGTTCTGCAGCTCACAAAGAACCAACTTGATGGCCCCATCACAAGCAGTGTTGGTCGAGCCTCATTTGATCAACCAGTTAAGATATGGGATAGAGGAACAAGAAAGCTCACAGATTTCACCACCCATTTCTCTTTTGTTATGAAAGCTGTTAATCCAAGTCAATTTGGTGATGGGTTATCATTCTTCATGGCTCCATTTCAATCTGATATTCCACACAATTCATCTGGTGGGTTCCTTGGTCTATTCAGCCAAGAATCTGCATTCAACACTAGCCAAAATCAAATAGTTGCAGTTGAGTTTGACAGTTTTAGGAATGATTGGGATCCAAGCTCTGATCATGTCGGAATAAATGTTAATTCCATACAATCGGTTGCGAATGTGAGTTGGGTGAGTAACATGAAGAACGGATCAACGGGTAATGCTTGGATATGGTATAACTCTACCACCAAAAATCTTTCTGTCTTCCTTACTTATGCTAATAATCCAATCTTTAATGGCAGTTCTAGTCTTTGGTATATCATTGATTTGAGGGATGTTTTGCCAGAAATGGTTAGAATTGGCTTTTCTGCTGCCACAGGTCAATGGATTGAAATACACAATATACAATCTTGGTCATTCAGTTCAAATTTGGACAACAGTAATGGGAAAAACATCAAGGTTGGTTTGGGAGTTGGTGTAAGTGTTGGTTTTGGTTCTTTAACTTGTGTTGTAGGTCTTCTATGGTTTACCTTTTGGAGAAAAAGAAAAGGACCAAATGGTGGAATAGAGGACAATACAGGTCTTGATGCTTCTATAGATGATGAATTTGAGAGAGGAACTGGTCCAAAGAGGTTCACCTACAAGGAACTAAGCCATGCAACCAACAACTTTGCAGAAGATGGAAAGCTTGGAGAAGGAGGATTTGGAGGTGTTTACAAAGGTTGTCTTGACAACCTCAACAACCTCGAAATCGCGGTGAAGAGGGTTTCAAAAGGATCAAAACAAGGAAAAAAGGAATACATATCAGAAGTAAGAACTATCAGCAGGCTGAGACATAGAAATTTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGATCTCATTCTTGTTTATGAGTATATGCCTAATGGAAGCCTTGATTCCCATCTATTTGGAAACAGAATTATGCTTACATGGACAGTGAGGTACAAGGTAGCATTAGGTTTGGCATCTGCTCTTCTTTATCTTCATGAAGAGTGGGAACAATGTGTGGTGCATAGGGATATTAAGTCAAGTAATGTCATGTTGGATGCAAATTTCAATGCCAAGCTTGGTGACTTTGGTCTTGCAAGGCTAGTAGACCATGAACTTGGGTCTCAAACTACTGTTTTGGCAGGCACAATGGGGTACCTAGCCCCAGAGTGTGTCACCACAGGGAAATCAAGTAAAGAATCTGATGTTTACAGCTTTGGTGTAGTTGCCCTTGAAATCACATGTGGTAGAAGACCAGTTGAAGTAAAAGAAGAGCCTGGCAAAGTTAGGCTTGTAGAATGGGTTTGGAACCTCTATGGAAAAGGGAAATTAACTGAAGCAGCTGATGAAAGATTAAACTTGGAATTTGATGAGAAGCAAATGGAATGTTTGATGATAGTTGGGTTGTGGTGTTGTCATCCTGATCATACCATGAGACCCTCCATTAGGCAAGTGATTAATGTTCTAAGTTTTGAAGCTCCTCTCCCAAGTCTTCCATCAAAGTTGCCAGTGCCAATGTATTATGCACCTCCAATGGAGATGTGCAAATTCTCCTACACCTCATCTGGCCTCACAAGCACAACCAAAGGATCTTCTACATACTCATCAATGACAGCAGGGTCCAGAAAATCGCTATTATAG	2040	0.4005	MAVFSFSSSYNQTKKTLFFIFTIFTLFFVLSNTAEAVFFNFSSFQPNLYQINFQGDSFFSNGVLQLTKNQLDGPITSSVGRASFDQPVKIWDRGTRKLTDFTTHFSFVMKAVNPSQFGDGLSFFMAPFQSDIPHNSSGGFLGLFSQESAFNTSQNQIVAVEFDSFRNDWDPSSDHVGINVNSIQSVANVSWVSNMKNGSTGNAWIWYNSTTKNLSVFLTYANNPIFNGSSSLWYIIDLRDVLPEMVRIGFSAATGQWIEIHNIQSWSFSSNLDNSNGKNIKVGLGVGVSVGFGSLTCVVGLLWFTFWRKRKGPNGGIEDNTGLDASIDDEFERGTGPKRFTYKELSHATNNFAEDGKLGEGGFGGVYKGCLDNLNNLEIAVKRVSKGSKQGKKEYISEVRTISRLRHRNLVQLIGWCHEQGDLILVYEYMPNGSLDSHLFGNRIMLTWTVRYKVALGLASALLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRRPVEVKEEPGKVRLVEWVWNLYGKGKLTEAADERLNLEFDEKQMECLMIVGLWCCHPDHTMRPSIRQVINVLSFEAPLPSLPSKLPVPMYYAPPMEMCKFSYTSSGLTSTTKGSSTYSSMTAGSRKSLL	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3586g00001	679	FunFam	L-type lectin-domain containing receptor kinase IX.1	337	429	-	-
	Gabi3586g00001	679	SUPERFAMILY	Protein kinase-like (PK-like)	334	624	IPR011009	-
	Gabi3586g00001	679	FunFam	L-type lectin-domain containing receptor kinase IX.1	35	281	-	-
	Gabi3586g00001	679	FunFam	Lectin-domain containing receptor kinase A4.3	430	642	-	-
	Gabi3586g00001	679	PANTHER	-	58	632	-	-
	Gabi3586g00001	679	Pfam	Legume lectin domain	39	278	IPR001220	GO:0030246
	Gabi3586g00001	679	MobiDBLite	consensus disorder prediction	656	679	-	-
	Gabi3586g00001	679	CDD	STKc_IRAK	366	622	-	-
	Gabi3586g00001	679	Gene3D	Phosphorylase Kinase; domain 1	337	429	-	-
	Gabi3586g00001	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Gabi3586g00001	679	ProSiteProfiles	Protein kinase domain profile.	352	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3586g00001	679	ProSitePatterns	Protein kinases ATP-binding region signature.	358	382	IPR017441	GO:0005524
	Gabi3586g00001	679	SUPERFAMILY	Concanavalin A-like lectins/glucanases	36	274	IPR013320	-
	Gabi3586g00001	679	Pfam	Protein kinase domain	353	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3586g00001	679	Gene3D	Transferase(Phosphotransferase) domain 1	430	643	-	-
	Gabi3586g00001	679	ProSitePatterns	Legume lectins beta-chain signature.	158	164	IPR019825	-
	Gabi3586g00001	679	Gene3D	-	35	283	-	-
	Gabi3586g00001	679	SMART	serkin_6	352	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3586g00001	679	CDD	lectin_legume_LecRK_Arcelin_ConA	39	272	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3586g00001	Gabi-Chr3586	8218	10275	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3586g00001	17	641	Receptor kinase-like Gene Family	AT5G10530	52.713	0.0	613

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi3586g00001		Pkinase	6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3586g00001	-		-	gmx:100777201	1077.77