Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3585g00001 ATGAAAACCACAAGAGATGAAGGTAGTGGCTGTGATAATGCCACTATTTCAACTCATGGTTGGGGAAACATAAAGGTCACAAACCCTTCTTTTATGTATCGATCAGGTCCTCCTTTAACAGCCATAGACAAGTTCTTAGGGAACCAACAAAACCATTTCCTTCAAAAGCGACACCCACAGAACAATATTGCAAAGAAAAACCATGCAAGTGTTTTTGATCATGAGTTTTGCAGTTTTGCTTGTTCTGGTGATTCAACCTATAAGTATCTCTTGCATAACACTCAAGAAGCAAGCTTTATAACTCATCACCTCTTACCAAATGAAGAGGCTCTGATGAATTGGACACACCAAAACCCTACATTGTGTCAGAATGATGTGCAAGTTTTAGGGAATAATGCAAAACTTGTGGGAAGAAGGCCTGAGAAAGGATCTTCTGTGTCTTTAATCAAAGGACAATGGAGTGAAGAAGAAGACAGGAAACTGTTAAAGTTGGTGAAGAAATATGGTCTAAGAAAATGGTCTCAAATAGCTGAGAATTTGGATGGATCAAGAGCTGGCAAGCAGTGTAGAGAGAGATGGCATAATCATTTGCGCCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAAGATATTAGTGGAAACACATACTAAGATTGGAAACCGTTGGGCAGAGATGGCAAAGCTTATTCCAGGAAGAACAGAGAATGCAATAAAGAACCATTGGAATGCAACTAAAAGGAGGCAAAAGTCAAGGAGAAAGAACAAAAGGACAGTAACTTCTAATGGAAATCCACAATCCTCTATTCTTGAAGATTACATCAAAAGCAAGACTCTTAATAGTACCACCTTCATTAACCCCACAAAGAGCATCATCAAAACCACAACAACCACTGAGGACCCTACAACAACTGATCAATCAGGCCTCATTTTTTCTCAACTCTCTGATTCTGTTACCAATAATGACAACTGTTTATCACCACAAACTTCTGAATATGATGATGAGTTACTTTTCATGCAACAATTTTTCAAGGAGAATCAGCCCCAACAACATCACCACCTTCCACTTGTCAATGTTGAATCTCTTAATGGTGATCAACTTCTCACTAATGTGACTGGCTGTGGTTTCCCCCATTCCAACCCAAATCCAAATTCACATAACATGTACTTGGGTGAGAGTCTCACACCTAGAAAGACTCCTGCACCTATCAATTACCTTGATTCTGATCTCTGTCTCTCTCACTTGCTGAATGGAACTGACAGTTCATCACTTTGCTGTGATTATGGGAGTCAAAACCAGAACATGGACTTGCTGCTTGAGGATCAATATAGTTTAGAAGGAAATAATAAACAGATGGATTTGATGGAGTTGGTTTGTTCTGCTCAGTTTTACCACTAG 1404 0.3917 MKTTRDEGSGCDNATISTHGWGNIKVTNPSFMYRSGPPLTAIDKFLGNQQNHFLQKRHPQNNIAKKNHASVFDHEFCSFACSGDSTYKYLLHNTQEASFITHHLLPNEEALMNWTHQNPTLCQNDVQVLGNNAKLVGRRPEKGSSVSLIKGQWSEEEDRKLLKLVKKYGLRKWSQIAENLDGSRAGKQCRERWHNHLRPDIKKDSWSEEEEKILVETHTKIGNRWAEMAKLIPGRTENAIKNHWNATKRRQKSRRKNKRTVTSNGNPQSSILEDYIKSKTLNSTTFINPTKSIIKTTTTTEDPTTTDQSGLIFSQLSDSVTNNDNCLSPQTSEYDDELLFMQQFFKENQPQQHHHLPLVNVESLNGDQLLTNVTGCGFPHSNPNPNSHNMYLGESLTPRKTPAPINYLDSDLCLSHLLNGTDSSSLCCDYGSQNQNMDLLLEDQYSLEGNNKQMDLMELVCSAQFYH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3585g00001 467 SUPERFAMILY Homeodomain-like 147 244 IPR009057 -
Gabi3585g00001 467 Gene3D - 149 202 - -
Gabi3585g00001 467 ProSiteProfiles Myb-like domain profile. 198 248 IPR001005 -
Gabi3585g00001 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 201 IPR017930 -
Gabi3585g00001 467 Gene3D - 204 273 - -
Gabi3585g00001 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 252 IPR017930 -
Gabi3585g00001 467 CDD SANT 153 197 IPR001005 -
Gabi3585g00001 467 SMART sant 149 199 IPR001005 -
Gabi3585g00001 467 SMART sant 202 250 IPR001005 -
Gabi3585g00001 467 Pfam Myb-like DNA-binding domain 153 212 - -
Gabi3585g00001 467 CDD SANT 205 248 IPR001005 -
Gabi3585g00001 467 PANTHER MYB PROTEIN-RELATED 127 267 - -
Gabi3585g00001 467 MobiDBLite consensus disorder prediction 246 269 - -
Gabi3585g00001 467 FunFam Transcriptional activator Myb isoform A 149 203 - -
Gabi3585g00001 467 ProSiteProfiles Myb-like domain profile. 145 197 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3585g00001 Gabi-Chr3585 17521 19762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3585g00001 31 463 MYB Transcription Factor Family AT5G58850 37.939 7.00e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3585g00001 Myb_DNA-bind_6 4.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3585g00001 K09422 - gmx:100786295 391.734