Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3584g00001 ATGGAAGCACGTTCTACTTTCTCCATTGAAAGATCAAATGCAAGACAACTCAATAACATGGGGATGTCTGGAGTATTTTCTTCATCCTTGCCGGTCCTTCCAACTCCCCTAGACGAGACATGTCCCAAGTTTCCTGATTCACAGCTGGCTTTTGTGGAACACGAGCTTATGACAAGACCTTTTACTCATTCAAGTTATTTAAATTCCGGTGGAGTAGTTGGGCCCATTTTTTCATCTTCCCCTGGATATTCAACCGATCTCCATCACTCATCCCTTTCACATCATGAAAAACACTCTCGAAATGCTCATTTTATTTCACATTCATCGACTAACATAGTTCCATTATCATATTCTTCAAATACTAGACCTCCAACTTCTACGACATCAAACCATTATTCCAAAGAAAACAGTGCTTCCTGGCAGACAGATTCCCTGGCAAGCTTTCTGGATTTTCCTGCAAATACCTCTATTGATAATAGTCGGGCAGAAAGCAGTGCCCACAATATCAAGGCATCTGAGGAGTATTGTAAACAAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGATACTTTGACTTCTAATTGGAATGACCTTCTTGCTGACAACATTCAAGATCTTGAGCCAAAGGTTTCAAAACCATTAACGAAGTTTCCAGAACATCAATGCCAAGGCCATCAACAACTTTCTGCTTCATATGGAGAAAATTGCATTGTTGCTGCCCCTTCTTCCCCAGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACACCAGAACTTCATGAGGCTTTTGTGGAGGCTGTCAATCAACTTGGTGGGAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAGTACAGGACAGCTAGATATAGACCGGAATCATCTGAAGGAGTCACGGAGAAAAAAGCAAGTTCCATTGAAGAGATGTCATCTCTAGATTTGAAAACTGGTATTGAGATTACTGAAGCTCTACGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGGAATCTACAGCTGCGAATAGAAGAACAAGGAAGATATCTCCAGATGATGTTTGAGAAGCAGTGTAAACCTGGCATTGAAACGTCTAAGGCACCATCATCTAACATTGAGAGTCCATCTGGAGATTATTTGAATTTTACTAAAGATTTTCCTGCCAAAAACGAAATGGAAGCATCACAAGTGGACCATTGCAGGTCAGGACCTGATCAAGCTAATGACAGTACCACCGTTGAGGAAGGCTCACTGGAAATGTGTGGGAAGCATGATTCTCCCAAAACTCATCCTTCTGAGAATCCTATGCAATATGACAATACTATTAATGATAATGATCAAGCCCCGAAGCGTCAAAGAAAAGATGAGTAA 1452 0.4167 MEARSTFSIERSNARQLNNMGMSGVFSSSLPVLPTPLDETCPKFPDSQLAFVEHELMTRPFTHSSYLNSGGVVGPIFSSSPGYSTDLHHSSLSHHEKHSRNAHFISHSSTNIVPLSYSSNTRPPTSTTSNHYSKENSASWQTDSLASFLDFPANTSIDNSRAESSAHNIKASEEYCKQNDWQEWADQLISDDDTLTSNWNDLLADNIQDLEPKVSKPLTKFPEHQCQGHQQLSASYGENCIVAAPSSPANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVTEKKASSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETSKAPSSNIESPSGDYLNFTKDFPAKNEMEASQVDHCRSGPDQANDSTTVEEGSLEMCGKHDSPKTHPSENPMQYDNTINDNDQAPKRQRKDE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3584g00001 483 Pfam Myb-like DNA-binding domain 257 308 IPR001005 -
Gabi3584g00001 483 Coils Coil 343 363 - -
Gabi3584g00001 483 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 229 464 IPR044848 GO:0003700
Gabi3584g00001 483 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 309 IPR006447 GO:0003677
Gabi3584g00001 483 MobiDBLite consensus disorder prediction 428 442 - -
Gabi3584g00001 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 252 312 IPR017930 -
Gabi3584g00001 483 MobiDBLite consensus disorder prediction 419 483 - -
Gabi3584g00001 483 FunFam Myb family transcription factor 254 312 - -
Gabi3584g00001 483 Gene3D - 254 313 - -
Gabi3584g00001 483 MobiDBLite consensus disorder prediction 458 472 - -
Gabi3584g00001 483 MobiDBLite consensus disorder prediction 115 136 - -
Gabi3584g00001 483 Pfam MYB-CC type transfactor, LHEQLE motif 340 386 IPR025756 -
Gabi3584g00001 483 SUPERFAMILY Homeodomain-like 253 309 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3584g00001 Gabi-Chr3584 13933 21123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3584g00001 1 384 G2-like Transcription Factor Family AT4G28610 50.000 2.04e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3584g00001 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3584g00001 - - gmx:100793593 713.375